Conservation of cofitness between PFLU_RS07240 and PFLU_RS13400 in Pseudomonas fluorescens SBW25

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 1.0 PFLU_RS13400 sugar ABC transporter permease 0.52 19
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 1.00 PFLU_RS13400 sugar ABC transporter permease low > 109
Pseudomonas simiae WCS417 0.92 PS417_07130 RNA polymerase sigma-H factor AlgU 0.97 PS417_12710 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) low > 88
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_17635 RNA polymerase subunit sigma 0.95 AO353_25885 sugar ABC transporter permease low > 101
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_3325 Sigma factor RpoE negative regulatory protein RseB precursor 0.93 Pf1N1B4_4849 Various polyols ABC transporter, permease component 1 low > 87
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_4514 Sigma factor RpoE negative regulatory protein RseB precursor 0.94 PfGW456L13_3041 Various polyols ABC transporter, permease component 1 low > 87
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_04565 RNA polymerase subunit sigma 0.94 AO356_27675 sugar ABC transporter permease low > 104
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_2754 Sigma factor RpoE negative regulatory protein RseB precursor 0.94 Pf6N2E2_809 Various polyols ABC transporter, permease component 1 low > 103
Pseudomonas sp. RS175 0.70 PFR28_00692 Sigma factor AlgU regulatory protein MucB 0.94 PFR28_01712 sn-glycerol-3-phosphate transport system permease protein UgpA low > 88
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.87 Psyr_2439 mannitol ABC transporter membrane protein / sorbitol ABC transporter membrane protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.87 Psyr_2439 mannitol ABC transporter membrane protein / sorbitol ABC transporter membrane protein low > 86
Burkholderia phytofirmans PsJN 0.17 BPHYT_RS14395 sugar dehydratase 0.56 BPHYT_RS16110 ABC transporter for D-Sorbitol, permease component 2 (from data) low > 109
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_12475 sigma-E factor regulatory protein RseB 0.14 CSW01_07790 glycerol-3-phosphate transporter permease
Paraburkholderia graminis OAS925 0.16 ABIE53_003041 sigma-E factor negative regulatory protein RseB 0.56 ABIE53_003395 sorbitol/mannitol transport system permease protein low > 113
Paraburkholderia bryophila 376MFSha3.1 0.16 H281DRAFT_04357 sigma E regulatory protein, MucB/RseB 0.56 H281DRAFT_04158 sorbitol ABC transporter membrane protein /mannitol ABC transporter membrane protein low > 103
Paraburkholderia sabiae LMG 24235 0.16 QEN71_RS04585 MucB/RseB C-terminal domain-containing protein 0.60 QEN71_RS02595 sugar ABC transporter permease low > 153
Pantoea sp. MT58 0.15 IAI47_04860 sigma-E factor regulatory protein RseB 0.18 IAI47_20095 sugar ABC transporter permease low > 76
Herbaspirillum seropedicae SmR1 0.14 HSERO_RS09635 transcriptional regulator 0.61 HSERO_RS02195 sugar ABC transporter permease low > 78
Dickeya dianthicola 67-19 0.14 HGI48_RS15840 sigma-E factor regulatory protein RseB 0.20 HGI48_RS04580 ABC transporter permease subunit low > 71
Dickeya dianthicola ME23 0.14 DZA65_RS16920 sigma-E factor regulatory protein RseB 0.21 DZA65_RS04505 sugar ABC transporter permease low > 75
Dickeya dadantii 3937 0.14 DDA3937_RS15755 sigma-E factor regulatory protein RseB 0.21 DDA3937_RS04625 sugar ABC transporter permease low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.14 GFF2109 Sigma factor RpoE negative regulatory protein RseB precursor 0.16 GFF556 Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) low > 78
Acidovorax sp. GW101-3H11 0.13 Ac3H11_1571 Sigma factor RpoE negative regulatory protein RseB precursor 0.61 Ac3H11_2943 ABC transporter for D-Sorbitol, permease component 2 (from data)
Klebsiella michiganensis M5al 0.13 BWI76_RS21345 sigma-E factor regulatory protein RseB 0.16 BWI76_RS17840 sugar ABC transporter permease low > 92
Rahnella sp. WP5 0.13 EX31_RS21810 sigma-E factor regulatory protein RseB 0.19 EX31_RS07050 sugar ABC transporter permease low > 89
Ralstonia solanacearum GMI1000 0.13 RS_RS05235 sugar dehydratase 0.61 RS_RS10745 sugar ABC transporter permease
Erwinia tracheiphila SCR3 0.13 LU632_RS15415 rseB sigma-E factor regulatory protein RseB 0.18 LU632_RS00815 sugar ABC transporter permease low > 74
Pectobacterium carotovorum WPP14 0.13 HER17_RS05790 sigma-E factor regulatory protein RseB 0.19 HER17_RS17380 sugar ABC transporter permease low > 75
Ralstonia sp. UNC404CL21Col 0.13 ABZR87_RS10175 MucB/RseB C-terminal domain-containing protein 0.59 ABZR87_RS18685 sugar ABC transporter permease low > 80
Variovorax sp. OAS795 0.12 ABID97_RS08340 MucB/RseB C-terminal domain-containing protein 0.63 ABID97_RS07115 sugar ABC transporter permease low > 91
Serratia liquefaciens MT49 0.12 IAI46_19575 sigma-E factor regulatory protein RseB 0.18 IAI46_11765 sugar ABC transporter permease low > 86
Variovorax sp. SCN45 0.12 GFF3865 Sigma factor RpoE negative regulatory protein RseB precursor 0.61 GFF5273 Various polyols ABC transporter, permease protein 1 low > 127

Not shown: 29 genomes with orthologs for PFLU_RS07240 only; 15 genomes with orthologs for PFLU_RS13400 only