Conservation of cofitness between JDDGAC_01125 and JDDGAC_10725 in Escherichia coli ECRC98

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC98 1.0 JDDGAC_01125 sdaA L-serine ammonia-lyase 1.0 JDDGAC_10725 kdpD two-component system sensor histidine kinase KdpD 0.65 12
Escherichia coli ECRC99 1.00 KEDOAH_01560 sdaA L-serine ammonia-lyase 1.00 KEDOAH_20895 kdpD two-component system sensor histidine kinase KdpD — —
Escherichia coli ECRC100 1.00 OKFHMN_26550 sdaA L-serine ammonia-lyase 1.00 OKFHMN_07075 kdpD two-component system sensor histidine kinase KdpD low > 80
Escherichia coli ECRC102 1.00 NIAGMN_01515 sdaA L-serine ammonia-lyase 1.00 NIAGMN_05130 kdpD two-component system sensor histidine kinase KdpD — —
Escherichia coli ECRC101 1.00 MCAODC_18860 sdaA L-serine ammonia-lyase 1.00 MCAODC_26290 kdpD two-component system sensor histidine kinase KdpD low > 87
Escherichia coli ECRC62 1.00 BNILDI_15855 sdaA L-serine ammonia-lyase 1.00 BNILDI_21460 kdpD two-component system sensor histidine kinase KdpD low > 75
Escherichia coli ECOR38 1.00 HEPCGN_04940 sdaA L-serine ammonia-lyase 1.00 HEPCGN_01160 kdpD two-component system sensor histidine kinase KdpD low > 87
Escherichia coli ECOR27 1.00 NOLOHH_17070 sdaA L-serine ammonia-lyase 1.00 NOLOHH_23455 kdpD two-component system sensor histidine kinase KdpD low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01917 L-serine dehydratase 1 1.00 OHPLBJKB_03022 Sensor protein KdpD low > 73
Escherichia coli BW25113 1.00 b1814 sdaA L-serine deaminase I (NCBI) 0.99 b0695 kdpD fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein (NCBI) low > 76
Escherichia coli BL21 1.00 ECD_01784 L-serine dehydratase 1 1.00 ECD_00652 fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein low > 61
Escherichia fergusonii Becca 1.00 EFB2_02186 L-serine dehydratase 1 0.99 EFB2_03401 Sensor protein KdpD low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS10090 L-serine ammonia-lyase 0.99 ECOLIN_RS03755 two-component system sensor histidine kinase KdpD — —
Enterobacter sp. TBS_079 0.91 MPMX20_02719 L-serine dehydratase 1 0.83 MPMX20_01338 Sensor protein KdpD low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF2828 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) 0.88 GFF4607 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_0745 L-serine dehydratase, iron-sulfur-dependent, single chain form 0.83 EX28DRAFT_2283 Osmosensitive K+ channel histidine kinase low > 76
Klebsiella michiganensis M5al 0.90 BWI76_RS17875 L-serine ammonia-lyase 0.83 BWI76_RS08305 two-component sensor histidine kinase low > 92
Serratia liquefaciens MT49 0.89 IAI46_14795 L-serine ammonia-lyase 0.68 IAI46_06165 two-component system sensor histidine kinase KdbD low > 86
Erwinia tracheiphila SCR3 0.86 LU632_RS13185 sdaA L-serine ammonia-lyase 0.65 LU632_RS00800 kdpD two-component system sensor histidine kinase KdpD low > 74
Rahnella sp. WP5 0.86 EX31_RS24715 L-serine ammonia-lyase 0.68 EX31_RS23335 two-component system sensor histidine kinase KdbD low > 89
Pectobacterium carotovorum WPP14 0.86 HER17_RS11315 L-serine ammonia-lyase 0.66 HER17_RS15045 two-component system sensor histidine kinase KdpD low > 75
Pantoea sp. MT58 0.84 IAI47_08785 L-serine ammonia-lyase 0.66 IAI47_01250 two-component system sensor histidine kinase KdbD low > 76
Dickeya dadantii 3937 0.82 DDA3937_RS11265 L-serine ammonia-lyase 0.65 DDA3937_RS06370 two-component system sensor histidine kinase KdpD low > 74
Dickeya dianthicola ME23 0.81 DZA65_RS11645 L-serine ammonia-lyase 0.65 DZA65_RS06760 two-component system sensor histidine kinase KdbD low > 75
Dickeya dianthicola 67-19 0.81 HGI48_RS11300 L-serine ammonia-lyase 0.65 HGI48_RS06415 two-component system sensor histidine kinase KdpD low > 71
Pseudomonas sp. S08-1 0.51 OH686_16810 L-serine ammonia-lyase 0.27 OH686_01890 Osmosensitive K+ channel histidine kinase KdpD low > 80
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_18165 serine dehydratase 0.27 AO356_03300 histidine kinase low > 104
Pseudomonas sp. RS175 0.51 PFR28_03384 L-serine dehydratase 2 0.27 PFR28_00942 Sensor protein KdpD low > 88
Ralstonia solanacearum PSI07 0.51 RPSI07_RS08570 L-serine ammonia-lyase 0.40 RPSI07_RS08140 sensor histidine kinase KdpD low > 81
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_5557 L-serine ammonia-lyase (EC 4.3.1.17) (from data) 0.27 Pf6N2E2_2491 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) low > 103
Acidovorax sp. GW101-3H11 0.51 Ac3H11_929 L-serine ammonia-lyase (EC 4.3.1.17) (from data) 0.41 Ac3H11_2408 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) low > 79
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_02407 L-serine ammonia-lyase 0.41 H281DRAFT_04532 two-component system, OmpR family, sensor histidine kinase KdpD low > 103
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS19340 L-serine ammonia-lyase (EC 4.3.1.17) (from data) 0.42 BPHYT_RS06460 histidine kinase low > 109
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS03940 L-serine ammonia-lyase 0.39 ABZR87_RS04525 sensor histidine kinase KdpD low > 80
Paraburkholderia graminis OAS925 0.50 ABIE53_000240 L-serine dehydratase 0.41 ABIE53_001556 two-component system sensor histidine kinase KdpD low > 113
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS20080 L-serine ammonia-lyase (EC 4.3.1.17) (from data) 0.41 RR42_RS00495 histidine kinase low > 128
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS29225 L-serine ammonia-lyase 0.43 QEN71_RS24345 DUF4118 domain-containing protein low > 153
Ralstonia solanacearum UW163 0.50 UW163_RS04945 L-serine ammonia-lyase 0.40 UW163_RS04465 sensor histidine kinase KdpD — —
Ralstonia solanacearum IBSBF1503 0.50 RALBFv3_RS08665 L-serine ammonia-lyase 0.40 RALBFv3_RS09130 sensor histidine kinase KdpD low > 76
Caulobacter crescentus NA1000 Δfur 0.44 CCNA_03206 L-serine dehydratase 0.27 CCNA_01666 osmosensitive K+ channel histidine kinase kdpD low > 67
Caulobacter crescentus NA1000 0.44 CCNA_03206 L-serine dehydratase 0.27 CCNA_01666 osmosensitive K+ channel histidine kinase kdpD low > 66
Sphingomonas koreensis DSMZ 15582 0.43 Ga0059261_0220 L-serine dehydratase, iron-sulfur-dependent, single chain form 0.27 Ga0059261_3881 Osmosensitive K+ channel histidine kinase 0.57 28
Mycobacterium tuberculosis H37Rv 0.42 Rv0069c Probable L-serine dehydratase SdaA (L-serine deaminase) (SDH) (L-SD) 0.21 Rv1028c Probable sensor protein KdpD low > 58

Not shown: 9 genomes with orthologs for JDDGAC_01125 only; 28 genomes with orthologs for JDDGAC_10725 only