| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS17745 | | hypothetical protein | 1.0 | HSERO_RS13890 | | LuxR family transcriptional regulator | 0.35 | 4 |
| Ralstonia solanacearum IBSBF1503 | 0.63 | RALBFv3_RS03535 | | ATP-binding protein | 0.54 | RALBFv3_RS10600 | | DNA-binding response regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.63 | UW163_RS10135 | | ATP-binding protein | 0.54 | UW163_RS02980 | | DNA-binding response regulator | — | — |
| Ralstonia solanacearum GMI1000 | 0.62 | RS_RS10985 | | ATP-binding protein | 0.55 | RS_RS01435 | | DNA-binding response regulator | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.61 | ABZR87_RS15400 | | helicase HerA-like C-terminal domain-containing protein | 0.54 | ABZR87_RS06400 | | response regulator transcription factor | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.58 | RPSI07_RS13690 | | DUF853 domain-containing protein | 0.54 | RPSI07_RS22720 | | DNA-binding response regulator | low | > 81 |
| Dechlorosoma suillum PS | 0.56 | Dsui_0490 | | putative ATPase | 0.44 | Dsui_2158 | | response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.55 | ABCV34_RS06665 | | helicase HerA-like C-terminal domain-containing protein | 0.44 | ABCV34_RS08970 | | response regulator transcription factor | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.55 | Ac3H11_2424 | | ATPase component BioM of energizing module of biotin ECF transporter | 0.48 | Ac3H11_3852 | | DNA-binding response regulator, LuxR family | — | — |
| Rahnella sp. WP5 | 0.52 | EX31_RS04655 | | DUF853 domain-containing protein | 0.37 | EX31_RS24145 | | UvrY/SirA/GacA family response regulator transcription factor | 0.33 | 78 |
| Escherichia coli ECOR38 | 0.52 | HEPCGN_09965 | yjgR | Uncharacterized protein YjgR | 0.36 | HEPCGN_04175 | uvrC | excinuclease ABC subunit UvrC | low | > 87 |
| Escherichia coli ECRC62 | 0.52 | BNILDI_07475 | yjgR | Uncharacterized protein YjgR | 0.36 | BNILDI_15230 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | low | > 75 |
| Escherichia coli ECOR27 | 0.51 | NOLOHH_04040 | yjgR | Uncharacterized protein YjgR | 0.36 | NOLOHH_16440 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.51 | OHPLBJKB_03773 | | hypothetical protein | 0.36 | OHPLBJKB_01815 | | Response regulator UvrY | low | > 73 |
| Escherichia coli BW25113 | 0.51 | b4263 | yjgR | predicted ATPase (NCBI) | 0.36 | b1914 | uvrY | response regulator (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.51 | MCAODC_02280 | yjgR | Uncharacterized protein YjgR | 0.36 | MCAODC_19570 | uvrC | excinuclease ABC subunit UvrC | low | > 87 |
| Escherichia coli ECRC99 | 0.51 | KEDOAH_16380 | yjgR | Uncharacterized protein YjgR | 0.36 | KEDOAH_02270 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC98 | 0.51 | JDDGAC_15415 | yjgR | Uncharacterized protein YjgR | 0.36 | JDDGAC_00410 | uvrC | excinuclease ABC subunit UvrC | low | > 86 |
| Escherichia coli ECRC100 | 0.51 | OKFHMN_11775 | yjgR | Uncharacterized protein YjgR | 0.36 | OKFHMN_25820 | uvrC | excinuclease ABC subunit UvrC | low | > 80 |
| Escherichia coli ECRC102 | 0.51 | NIAGMN_09625 | yjgR | Uncharacterized protein YjgR | 0.36 | NIAGMN_02230 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli Nissle 1917 | 0.51 | ECOLIN_RS24710 | | helicase HerA-like C-terminal domain-containing protein | 0.36 | ECOLIN_RS10900 | | UvrY/SirA/GacA family response regulator transcription factor | — | — |
| Escherichia fergusonii Becca | 0.51 | EFB2_04272 | | hypothetical protein | 0.36 | EFB2_02032 | | Response regulator UvrY | low | > 86 |
| Serratia liquefaciens MT49 | 0.51 | IAI46_23600 | | DUF853 family protein | 0.37 | IAI46_09205 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 86 |
| Enterobacter asburiae PDN3 | 0.50 | EX28DRAFT_3273 | | Predicted ATPase | 0.36 | EX28DRAFT_0633 | | two component transcriptional regulator, LuxR family | low | > 76 |
| Pantoea sp. MT58 | 0.50 | IAI47_16720 | | DUF853 domain-containing protein | 0.35 | IAI47_12470 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 76 |
| Enterobacter sp. TBS_079 | 0.50 | MPMX20_04124 | | hypothetical protein | 0.36 | MPMX20_02839 | | Response regulator UvrY | low | > 85 |
| Klebsiella michiganensis M5al | 0.50 | BWI76_RS03060 | | ATP-binding protein | 0.36 | BWI76_RS18335 | | DNA-binding response regulator | low | > 92 |
| Shewanella sp. ANA-3 | 0.43 | Shewana3_0459 | | protein of unknown function DUF853, NPT hydrolase putative (RefSeq) | 0.38 | Shewana3_1608 | | response regulator (RefSeq) | low | > 73 |
| Rhodanobacter sp. FW510-T8 | 0.42 | OKGIIK_04775 | herA | ATP-binding protein | 0.31 | OKGIIK_07415 | | DNA-binding response regulator | low | > 52 |
| Shewanella oneidensis MR-1 | 0.42 | SO0459 | | conserved hypothetical protein (NCBI ptt file) | 0.38 | SO1860 | | DNA-binding response regulator, LuxR family (NCBI ptt file) | low | > 76 |
| Pseudomonas fluorescens FW300-N2C3 | 0.39 | AO356_17915 | | ATP-binding protein | 0.40 | AO356_14380 | | transcriptional regulator | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.39 | Pf6N2E2_5513 | | ATPase component BioM of energizing module of biotin ECF transporter | 0.39 | Pf6N2E2_4814 | | DNA-binding response regulator, LuxR family, near polyamine transporter | low | > 103 |
| Pseudomonas putida KT2440 | 0.38 | PP_1372 | | conserved protein of unknown function | 0.37 | PP_0410 | | DNA-binding response regulator UhpA | low | > 96 |
| Pseudomonas sp. RS175 | 0.38 | PFR28_03433 | | hypothetical protein | 0.40 | PFR28_04055 | | Response regulator UvrY | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.37 | PfGW456L13_1831 | | ATPase component BioM of energizing module of biotin ECF transporter | 0.42 | PfGW456L13_3685 | | DNA-binding response regulator, LuxR family | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.37 | Pf1N1B4_659 | | ATPase component BioM of energizing module of biotin ECF transporter | 0.40 | Pf1N1B4_2537 | | DNA-binding response regulator, LuxR family, near polyamine transporter | low | > 87 |
| Pseudomonas sp. S08-1 | 0.37 | OH686_18310 | | Uncharacterized protein YjgR | 0.38 | OH686_15085 | | DNA-binding response regulator, LuxR family, near polyamine transporter | low | > 80 |
Not shown: 21 genomes with orthologs for HSERO_RS17745 only; 21 genomes with orthologs for HSERO_RS13890 only