Conservation of cofitness between HSERO_RS03475 and HSERO_RS11465 in Herbaspirillum seropedicae SmR1

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03475 NUDIX hydrolase 1.0 HSERO_RS11465 sodium:proton antiporter 0.32 20
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF2602 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.32 GFF4701 Na+/H+ antiporter NhaA type low > 90
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS26735 NUDIX hydrolase 0.48 QEN71_RS19280 Na+/H+ antiporter NhaA low > 153
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS18575 NUDIX hydrolase 0.49 PFLU_RS06575 Na+/H+ antiporter NhaA — —
Pseudomonas fluorescens SBW25 0.42 PFLU_RS18575 NUDIX hydrolase 0.49 PFLU_RS06575 Na+/H+ antiporter NhaA — —
Pseudomonas simiae WCS417 0.41 PS417_16535 NUDIX hydrolase 0.49 PS417_06545 pH-dependent sodium/proton antiporter — —
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_2640 Nudix-like NDP and NTP phosphohydrolase YmfB 0.48 PfGW456L13_4617 Na+/H+ antiporter NhaA type — —
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_22115 NUDIX hydrolase 0.48 AO356_05390 sodium:proton antiporter — —
Pseudomonas sp. RS175 0.40 PFR28_02618 Phosphatase NudJ 0.49 PFR28_00526 Na(+)/H(+) antiporter NhaA — —
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_27700 NUDIX hydrolase 0.48 AO353_17055 sodium:proton antiporter — —
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_287 Nudix-like NDP and NTP phosphohydrolase YmfB 0.48 Pf6N2E2_2937 Na+/H+ antiporter NhaA type — —
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_4049 Nudix-like NDP and NTP phosphohydrolase YmfB 0.47 Pf1N1B4_3202 Na+/H+ antiporter NhaA type — —
Lysobacter sp. OAE881 0.39 ABIE51_RS11505 NUDIX hydrolase 0.43 ABIE51_RS04100 Na+/H+ antiporter NhaA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_3189 NUDIX hydrolase 0.45 Psyr_4210 sodium/proton antiporter, NhaA family — —
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_3189 NUDIX hydrolase 0.45 Psyr_4210 sodium/proton antiporter, NhaA family — —
Pseudomonas putida KT2440 0.37 PP_4013 MutT/nudix family protein 0.48 PP_1132 Na(+)/H(+) antiporter NhaA 1 low > 96
Shewanella loihica PV-4 0.34 Shew_1561 NUDIX hydrolase (RefSeq) 0.45 Shew_1042 Na+/H+ antiporter NhaA (RefSeq) low > 60
Shewanella amazonensis SB2B 0.33 Sama_2061 MutT/nudix family protein (RefSeq) 0.45 Sama_0868 Na+/H+ antiporter (RefSeq) low > 62
Rahnella sp. WP5 0.29 EX31_RS24580 NUDIX hydrolase 0.49 EX31_RS03890 Na+/H+ antiporter NhaA low > 89
Shewanella sp. ANA-3 0.29 Shewana3_1748 NUDIX hydrolase (RefSeq) 0.47 Shewana3_3038 Na+/H+ antiporter NhaA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.28 SO2631 MutT/nudix family protein (NCBI ptt file) 0.47 SO1336 nhaA Na+/H+ antiporter (NCBI ptt file) low > 76
Escherichia coli BW25113 0.24 b1134 ymfB bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) 0.46 b0019 nhaA pH-dependent sodium/proton antiporter (NCBI) low > 76
Escherichia coli ECRC99 0.24 KEDOAH_24835 nudJ phosphatase NudJ 0.47 KEDOAH_17125 nhaA Na+/H+ antiporter NhaA — —
Escherichia coli ECRC100 0.24 OKFHMN_00750 nudJ phosphatase NudJ 0.47 OKFHMN_11030 nhaA Na+/H+ antiporter NhaA low > 80
Escherichia coli ECRC62 0.24 BNILDI_19060 nudJ phosphatase NudJ 0.47 BNILDI_08245 nhaA Na+/H+ antiporter NhaA low > 75
Escherichia coli ECRC102 0.24 NIAGMN_24895 nudJ phosphatase NudJ 0.47 NIAGMN_08880 nhaA Na+/H+ antiporter NhaA — —
Escherichia coli ECRC101 0.24 MCAODC_22335 nudJ phosphatase NudJ 0.47 MCAODC_01545 nhaA Na+/H+ antiporter NhaA 0.43 82
Escherichia coli ECOR38 0.24 HEPCGN_24225 nudJ phosphatase NudJ 0.47 HEPCGN_09015 nhaA Na+/H+ antiporter NhaA low > 87
Escherichia coli ECRC98 0.24 JDDGAC_06615 nudJ phosphatase NudJ 0.47 JDDGAC_14625 nhaA Na+/H+ antiporter NhaA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_02534 Phosphatase NudJ 0.47 OHPLBJKB_03642 Na(+)/H(+) antiporter NhaA low > 73
Escherichia coli BL21 0.24 ECD_01132 bifunctional thiamine pyrimidine pyrophosphate hydrolase and thiamine pyrophosphate hydrolase 0.47 ECD_00018 sodium-proton antiporter — —
Escherichia coli Nissle 1917 0.24 ECOLIN_RS06630 phosphatase NudJ 0.49 ECOLIN_RS00105 Na+/H+ antiporter NhaA — —
Escherichia fergusonii Becca 0.24 EFB2_02841 Phosphatase NudJ 0.49 EFB2_04024 Na(+)/H(+) antiporter NhaA low > 86
Escherichia coli ECOR27 0.24 NOLOHH_20895 nudJ phosphatase NudJ 0.47 NOLOHH_03360 nhaA Na+/H+ antiporter NhaA low > 75
Enterobacter sp. TBS_079 0.24 MPMX20_01818 Phosphatase NudJ 0.46 MPMX20_00722 Na(+)/H(+) antiporter NhaA low > 85
Klebsiella michiganensis M5al 0.23 BWI76_RS11320 NUDIX hydrolase 0.47 BWI76_RS04315 Na+/H+ antiporter NhaA — —
Serratia liquefaciens MT49 0.23 IAI46_10445 NUDIX hydrolase 0.45 IAI46_03085 Na+/H+ antiporter NhaA low > 86
Enterobacter asburiae PDN3 0.23 EX28DRAFT_1796 ADP-ribose pyrophosphatase 0.46 EX28DRAFT_3628 Na+/H+ antiporter NhaA low > 76
Erwinia tracheiphila SCR3 0.23 LU632_RS14570 NUDIX hydrolase 0.43 LU632_RS02665 nhaA Na+/H+ antiporter NhaA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF3419 Nudix-like NDP and NTP phosphohydrolase YmfB 0.47 GFF1119 Na+/H+ antiporter NhaA type low > 78
Pectobacterium carotovorum WPP14 0.22 HER17_RS11620 NUDIX hydrolase 0.46 HER17_RS02850 Na+/H+ antiporter NhaA — —
Dickeya dadantii 3937 0.22 DDA3937_RS11480 NUDIX hydrolase 0.45 DDA3937_RS18360 Na+/H+ antiporter NhaA — —
Dickeya dianthicola ME23 0.22 DZA65_RS11860 NUDIX hydrolase 0.45 DZA65_RS19435 Na+/H+ antiporter NhaA — —
Dickeya dianthicola 67-19 0.22 HGI48_RS11525 NUDIX hydrolase 0.44 HGI48_RS18295 Na+/H+ antiporter NhaA — —
Pantoea sp. MT58 0.21 IAI47_11910 NUDIX hydrolase 0.46 IAI47_16165 Na+/H+ antiporter NhaA — —

Not shown: 23 genomes with orthologs for HSERO_RS03475 only; 21 genomes with orthologs for HSERO_RS11465 only