Conservation of cofitness between HSERO_RS04220 and HSERO_RS02425 in Herbaspirillum seropedicae SmR1

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS04220 epoxyqueuosine reductase 1.0 HSERO_RS02425 transcriptional activator 0.30 17
Pseudomonas syringae pv. syringae B728a ΔmexB 0.59 Psyr_0566 4Fe-4S cluster binding protein 0.34 Psyr_3226 Transcriptional activator RfaH low > 86
Pseudomonas syringae pv. syringae B728a 0.59 Psyr_0566 4Fe-4S cluster binding protein 0.34 Psyr_3226 Transcriptional activator RfaH low > 86
Castellaniella sp019104865 MT123 0.58 ABCV34_RS13905 tRNA epoxyqueuosine(34) reductase QueG 0.30 ABCV34_RS12845 transcription termination/antitermination NusG family protein low > 48
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG 0.36 Pf1N1B4_5950 Transcriptional activator RfaH — —
Serratia liquefaciens MT49 0.55 IAI46_01595 tRNA epoxyqueuosine(34) reductase QueG 0.29 IAI46_01105 transcription/translation regulatory transformer protein RfaH low > 86
Escherichia coli ECRC98 0.55 JDDGAC_15925 queG tRNA epoxyqueuosine(34) reductase QueG 0.31 JDDGAC_17890 rfaH transcription/translation regulatory transformer protein RfaH low > 86
Escherichia coli ECRC102 0.55 NIAGMN_10135 queG tRNA epoxyqueuosine(34) reductase QueG 0.31 NIAGMN_12020 rfaH transcription/translation regulatory transformer protein RfaH — —
Escherichia coli ECRC99 0.55 KEDOAH_15870 queG tRNA epoxyqueuosine(34) reductase QueG 0.31 KEDOAH_13885 rfaH transcription/translation regulatory transformer protein RfaH — —
Pseudomonas stutzeri RCH2 0.55 Psest_0677 iron-sulfur cluster binding protein, putative 0.38 Psest_2605 transcriptional activator RfaH low > 67
Escherichia coli ECRC100 0.55 OKFHMN_12285 queG tRNA epoxyqueuosine(34) reductase QueG 0.31 OKFHMN_14265 rfaH transcription/translation regulatory transformer protein RfaH 0.84 20
Escherichia coli ECOR38 0.55 HEPCGN_10515 queG tRNA epoxyqueuosine(34) reductase QueG 0.31 HEPCGN_12895 rfaH transcription/translation regulatory transformer protein RfaH low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03876 Epoxyqueuosine reductase 0.31 OHPLBJKB_04211 Transcription antitermination protein RfaH low > 73
Escherichia coli ECOR27 0.55 NOLOHH_04550 queG tRNA epoxyqueuosine(34) reductase QueG 0.31 NOLOHH_06395 rfaH transcription/translation regulatory transformer protein RfaH low > 75
Escherichia coli ECRC101 0.55 MCAODC_02800 queG tRNA epoxyqueuosine(34) reductase QueG 0.31 MCAODC_04770 rfaH transcription/translation regulatory transformer protein RfaH low > 87
Escherichia coli BW25113 0.55 b4166 yjeS predicted Fe-S electron transport protein (NCBI) 0.31 b3842 rfaH transcriptional activator RfaH (NCBI) low > 76
Escherichia coli ECRC62 0.55 BNILDI_06940 queG tRNA epoxyqueuosine(34) reductase QueG 0.31 BNILDI_05135 rfaH transcription/translation regulatory transformer protein RfaH low > 75
Escherichia coli BL21 0.55 ECD_04033 epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis 0.31 ECD_03733 transcription antitermination protein low > 61
Escherichia coli Nissle 1917 0.55 ECOLIN_RS24200 tRNA epoxyqueuosine(34) reductase QueG 0.31 ECOLIN_RS22150 transcription/translation regulatory transformer protein RfaH low > 55
Escherichia fergusonii Becca 0.55 EFB2_04369 Epoxyqueuosine reductase 0.31 EFB2_04775 Transcription antitermination protein RfaH low > 86
Dickeya dadantii 3937 0.55 DDA3937_RS18645 tRNA epoxyqueuosine(34) reductase QueG 0.29 DDA3937_RS20290 transcription/translation regulatory transformer protein RfaH low > 74
Dickeya dianthicola 67-19 0.55 HGI48_RS18575 tRNA epoxyqueuosine(34) reductase QueG 0.29 HGI48_RS00935 transcription/translation regulatory transformer protein RfaH low > 71
Dickeya dianthicola ME23 0.55 DZA65_RS19710 tRNA epoxyqueuosine(34) reductase QueG 0.29 DZA65_RS00995 transcription/translation regulatory transformer protein RfaH low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF819 Epoxyqueuosine (oQ) reductase QueG 0.31 GFF267 Transcriptional activator RfaH low > 78
Klebsiella michiganensis M5al 0.54 BWI76_RS02505 tRNA epoxyqueuosine(34) reductase QueG 0.29 BWI76_RS01340 transcription/translation regulatory transformer protein RfaH — —
Marinobacter adhaerens HP15 0.54 HP15_2505 iron-sulfur cluster binding protein 0.27 HP15_p187g93 transcriptional activator RfaH low > 73
Pectobacterium carotovorum WPP14 0.54 HER17_RS02555 tRNA epoxyqueuosine(34) reductase QueG 0.28 HER17_RS20570 transcription/translation regulatory transformer protein RfaH low > 75
Shewanella oneidensis MR-1 0.54 SO3861 iron-sulfur cluster-binding protein (NCBI ptt file) 0.27 SO3194 transcriptional activator rfaH, putative (NCBI ptt file) low > 76
Enterobacter sp. TBS_079 0.53 MPMX20_00447 Epoxyqueuosine reductase 0.32 MPMX20_04440 Transcription antitermination protein RfaH low > 85
Shewanella sp. ANA-3 0.53 Shewana3_0745 putative iron-sulfur cluster binding protein (RefSeq) 0.28 Shewana3_1374 transcription antitermination protein nusG (RefSeq) low > 73
Enterobacter asburiae PDN3 0.53 EX28DRAFT_3363 epoxyqueuosine reductase 0.32 EX28DRAFT_4505 transcription elongation factor/antiterminator RfaH low > 76
Shewanella loihica PV-4 0.53 Shew_2979 putative iron-sulfur cluster binding protein (RefSeq) 0.27 Shew_1398 NusG antitermination factor (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_01810 tRNA epoxyqueuosine(34) reductase QueG 0.30 CSW01_05050 transcription/translation regulatory transformer protein RfaH low > 62
Rahnella sp. WP5 0.52 EX31_RS08850 tRNA epoxyqueuosine(34) reductase QueG 0.28 EX31_RS14590 transcription/translation regulatory transformer protein RfaH low > 89
Pantoea sp. MT58 0.52 IAI47_02560 tRNA epoxyqueuosine(34) reductase QueG 0.29 IAI47_18250 transcription/translation regulatory transformer protein RfaH low > 76
Shewanella amazonensis SB2B 0.50 Sama_2625 iron-sulfur cluster-binding protein (RefSeq) 0.34 Sama_2265 transcriptional activator rfaH, putative (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0486 iron-sulfur cluster binding protein, putative 0.36 B158DRAFT_2343 transcriptional activator RfaH low > 40
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_0824 iron-sulfur cluster binding protein, putative 0.16 Echvi_4415 Transcription antiterminator low > 79
Magnetospirillum magneticum AMB-1 0.30 AMB_RS03995 tRNA epoxyqueuosine(34) reductase QueG 0.26 AMB_RS00245 transcriptional activator RfaH low > 64
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS07695 tRNA epoxyqueuosine(34) reductase QueG 0.19 CA265_RS01815 antitermination protein NusG low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS07975 tRNA epoxyqueuosine(34) reductase QueG 0.19 ABZR88_RS14250 UpxY family transcription antiterminator low > 71

Not shown: 48 genomes with orthologs for HSERO_RS04220 only; 1 genomes with orthologs for HSERO_RS02425 only