Conservation of cofitness between HSERO_RS05535 and HSERO_RS01990 in Herbaspirillum seropedicae SmR1

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS05535 LysR family transcriptional regulator 1.0 HSERO_RS01990 shikimate 5-dehydrogenase 0.37 16
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_00128 transcriptional regulator, LysR family 0.53 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) — —
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS16205 LysR family transcriptional regulator 0.50 RR42_RS17645 shikimate dehydrogenase low > 128
Paraburkholderia graminis OAS925 0.53 ABIE53_001240 DNA-binding transcriptional LysR family regulator 0.53 ABIE53_003560 shikimate dehydrogenase — —
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS04820 LysR family transcriptional regulator 0.53 BPHYT_RS16975 shikimate 5-dehydrogenase 0.67 16
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS25180 LysR family transcriptional regulator 0.55 QEN71_RS27130 shikimate dehydrogenase low > 153
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS00130 LysR substrate-binding domain-containing protein 0.54 ABZR87_RS01605 shikimate dehydrogenase low > 80
Ralstonia solanacearum UW163 0.48 UW163_RS09140 LysR family transcriptional regulator 0.54 UW163_RS07680 shikimate dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS04530 LysR family transcriptional regulator 0.54 RALBFv3_RS05945 shikimate dehydrogenase low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF4112 Transcriptional regulator 0.48 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 90
Ralstonia solanacearum GMI1000 0.48 RS_RS12100 LysR family transcriptional regulator 0.54 RS_RS13890 shikimate dehydrogenase low > 80
Caulobacter crescentus NA1000 0.47 CCNA_03140 LysR-family transcriptional regulator 0.18 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) low > 66
Caulobacter crescentus NA1000 Δfur 0.47 CCNA_03140 LysR-family transcriptional regulator 0.18 CCNA_00003 shikimate 5-dehydrogenase low > 67
Ralstonia solanacearum PSI07 0.45 RPSI07_RS12845 LysR family transcriptional regulator 0.54 RPSI07_RS11300 shikimate dehydrogenase low > 81
Variovorax sp. OAS795 0.42 ABID97_RS17495 LysR family transcriptional regulator 0.40 ABID97_RS06300 shikimate dehydrogenase — —
Variovorax sp. SCN45 0.40 GFF470 Transcriptional regulator, LysR family 0.42 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 127
Desulfovibrio vulgaris Hildenborough JW710 0.37 DVU3313 transcriptional regulator, LysR family (TIGR) 0.23 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) — —
Serratia liquefaciens MT49 0.36 IAI46_11680 LysR family transcriptional regulator 0.43 IAI46_23240 shikimate dehydrogenase low > 86
Rahnella sp. WP5 0.34 EX31_RS16990 LysR family transcriptional regulator 0.41 EX31_RS15950 shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_3735 LysR family transcriptional regulator YnfL 0.55 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_09290 LysR family transcriptional regulator 0.56 AO356_11315 shikimate dehydrogenase low > 104
Dickeya dadantii 3937 0.33 DDA3937_RS10670 LysR family transcriptional regulator 0.42 DDA3937_RS19100 shikimate dehydrogenase — —
Sinorhizobium meliloti 1021 0.33 SM_b20009 transcriptional regulator 0.22 SMc02791 shikimate 5-dehydrogenase — —
Desulfovibrio vulgaris Miyazaki F 0.32 DvMF_2138 transcriptional regulator, LysR family (RefSeq) 0.19 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) — —
Castellaniella sp019104865 MT123 0.24 ABCV34_RS01520 LysR family transcriptional regulator 0.47 ABCV34_RS11620 shikimate dehydrogenase low > 48
Shewanella amazonensis SB2B 0.17 Sama_3283 DNA-binding transcriptional regulator IlvY (RefSeq) 0.44 Sama_0052 shikimate dehydrogenase (RefSeq) low > 62

Not shown: 0 genomes with orthologs for HSERO_RS05535 only; 77 genomes with orthologs for HSERO_RS01990 only