Conservation of cofitness between HGI48_RS06620 and HGI48_RS19135 in Dickeya dianthicola 67-19

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola 67-19 1.0 HGI48_RS06620 galactose-1-epimerase 1.0 HGI48_RS19135 glyoxylate bypass operon transcriptional repressor IclR 0.66 7
Dickeya dianthicola ME23 0.98 DZA65_RS06975 galactose-1-epimerase 1.00 DZA65_RS20255 glyoxylate bypass operon transcriptional repressor IclR low > 75
Dickeya dadantii 3937 0.91 DDA3937_RS06600 galactose-1-epimerase 0.98 DDA3937_RS19045 glyoxylate bypass operon transcriptional repressor IclR low > 74
Pectobacterium carotovorum WPP14 0.67 HER17_RS14770 galactose-1-epimerase 0.87 HER17_RS02305 glyoxylate bypass operon transcriptional repressor IclR low > 75
Serratia liquefaciens MT49 0.63 IAI46_06420 galactose-1-epimerase 0.81 IAI46_23160 glyoxylate bypass operon transcriptional repressor IclR low > 86
Rahnella sp. WP5 0.58 EX31_RS23565 galactose-1-epimerase 0.76 EX31_RS11755 glyoxylate bypass operon transcriptional repressor IclR 0.29 14
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF649 Aldose 1-epimerase (EC 5.1.3.3) 0.76 GFF1356 Acetate operon repressor low > 78
Escherichia coli BW25113 0.57 b0756 galM galactose-1-epimerase (mutarotase) (NCBI) 0.77 b4018 iclR repressor of aceBA operon (VIMSS) low > 76
Escherichia coli ECRC62 0.57 BNILDI_21155 galM galactose-1-epimerase 0.77 BNILDI_06135 iclR glyoxylate bypass operon transcriptional repressor IclR low > 75
Escherichia coli ECOR38 0.57 HEPCGN_01545 galM galactose-1-epimerase 0.76 HEPCGN_11890 iclR glyoxylate bypass operon transcriptional repressor IclR low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_02957 Aldose 1-epimerase 0.77 OHPLBJKB_04031 Transcriptional repressor IclR low > 73
Escherichia coli ECOR27 0.57 NOLOHH_23160 galM galactose-1-epimerase 0.77 NOLOHH_05385 iclR glyoxylate bypass operon transcriptional repressor IclR low > 75
Escherichia coli Nissle 1917 0.57 ECOLIN_RS04025 galactose-1-epimerase 0.76 ECOLIN_RS23155 glyoxylate bypass operon transcriptional repressor IclR low > 55
Escherichia fergusonii Becca 0.57 EFB2_03350 Aldose 1-epimerase 0.77 EFB2_04593 Transcriptional repressor IclR low > 86
Escherichia coli ECRC102 0.57 NIAGMN_04780 galM galactose-1-epimerase 0.77 NIAGMN_10995 iclR glyoxylate bypass operon transcriptional repressor IclR — —
Escherichia coli ECRC98 0.57 JDDGAC_10385 galM galactose-1-epimerase 0.77 JDDGAC_16870 iclR glyoxylate bypass operon transcriptional repressor IclR low > 86
Escherichia coli ECRC100 0.57 OKFHMN_06730 galM galactose-1-epimerase 0.77 OKFHMN_13245 iclR glyoxylate bypass operon transcriptional repressor IclR low > 80
Pantoea sp. MT58 0.57 IAI47_13595 galactose-1-epimerase 0.76 IAI47_17995 glyoxylate bypass operon transcriptional repressor IclR low > 76
Escherichia coli ECRC101 0.57 MCAODC_25950 galM galactose-1-epimerase 0.77 MCAODC_03745 iclR glyoxylate bypass operon transcriptional repressor IclR low > 87
Escherichia coli ECRC99 0.57 KEDOAH_21235 galM galactose-1-epimerase 0.77 KEDOAH_14915 iclR glyoxylate bypass operon transcriptional repressor IclR — —
Klebsiella michiganensis M5al 0.56 BWI76_RS08610 galactose-1-epimerase 0.75 BWI76_RS01680 transcriptional regulator IclR low > 92
Enterobacter asburiae PDN3 0.56 EX28DRAFT_2239 galactose mutarotase 0.73 EX28DRAFT_4327 transcriptional regulator, IclR family low > 76
Enterobacter sp. TBS_079 0.56 MPMX20_01383 Aldose 1-epimerase 0.75 MPMX20_00234 Transcriptional repressor IclR low > 85
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_07995 galactose-1-epimerase 0.10 CSW01_14195 IclR family transcriptional regulator low > 62
Paraburkholderia sabiae LMG 24235 0.28 QEN71_RS25885 aldose epimerase family protein 0.22 QEN71_RS35560 IclR family transcriptional regulator low > 153
Shewanella sp. ANA-3 0.28 Shewana3_3579 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.13 Shewana3_1275 IclR family transcriptional regulator (RefSeq) low > 73
Paraburkholderia bryophila 376MFSha3.1 0.26 H281DRAFT_03874 aldose 1-epimerase (EC 5.1.3.3) 0.21 H281DRAFT_02570 transcriptional regulator, IclR family low > 103
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_84 Aldose 1-epimerase (EC 5.1.3.3) 0.15 Pf1N1B4_2744 Transcriptional regulator, IclR family low > 87
Pseudomonas sp. RS175 0.25 PFR28_01305 Aldose 1-epimerase 0.20 PFR28_01464 Pca regulon regulatory protein low > 88
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS32835 aldose 1-epimerase 0.21 BPHYT_RS21735 IclR family transcriptional regulator — —
Azospirillum sp. SherDot2 0.24 MPMX19_06214 Aldose 1-epimerase 0.33 MPMX19_04433 Transcriptional repressor IclR low > 112
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS11665 galactose mutarotase 0.19 PFLU_RS17460 IclR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.24 PFLU_RS11665 galactose mutarotase 0.19 PFLU_RS17460 IclR family transcriptional regulator low > 109
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_01315 aldose epimerase 0.20 AO356_29660 IclR family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_2135 Aldose 1-epimerase (EC 5.1.3.3) 0.15 Pf6N2E2_1932 Transcriptional regulator, IclR family low > 103
Pseudomonas simiae WCS417 0.24 PS417_11040 aldose epimerase 0.18 PS417_15475 IclR family transcriptional regulator low > 88
Variovorax sp. OAS795 0.23 ABID97_RS06780 aldose epimerase family protein 0.21 ABID97_RS29345 IclR family transcriptional regulator low > 91
Sinorhizobium meliloti 1021 0.23 SMc03798 aldose 1-epimerase 0.35 SM_b20682 IclR family transcriptional regulator low > 103
Alteromonas macleodii MIT1002 0.22 MIT1002_00187 Aldose 1-epimerase precursor 0.17 MIT1002_03303 Negative regulator of allantoin and glyoxylate utilization operons low > 70
Variovorax sp. SCN45 0.22 GFF5187 Aldose 1-epimerase (EC 5.1.3.3) 0.22 GFF3163 Transcriptional regulator, IclR family low > 127
Agrobacterium fabrum C58 0.22 Atu2719 aldose epimerase 0.22 Atu0706 transcriptional regulator, IclR family low > 89
Rhizobium sp. OAE497 0.21 ABIE40_RS18585 aldose epimerase family protein 0.38 ABIE40_RS25215 HTH-type transcriptional regulator BhcR low > 107
Acidovorax sp. GW101-3H11 0.18 Ac3H11_3951 Aldose 1-epimerase (EC 5.1.3.3) 0.18 Ac3H11_3923 Transcriptional regulator, IclR family low > 79
Azospirillum brasilense Sp245 0.17 AZOBR_RS31270 aldose 1-epimerase 0.30 AZOBR_RS31930 transcriptional regulator low > 97
Hydrogenophaga sp. GW460-11-11-14-LB1 0.16 GFF791 Aldose 1-epimerase (EC 5.1.3.3) 0.20 GFF2386 Pca regulon regulatory protein PcaR low > 90
Dinoroseobacter shibae DFL-12 0.16 Dshi_2683 Aldose 1-epimerase (RefSeq) 0.32 Dshi_0886 transcriptional regulator, IclR family (RefSeq) low > 64

Not shown: 26 genomes with orthologs for HGI48_RS06620 only; 6 genomes with orthologs for HGI48_RS19135 only