Conservation of cofitness between HER17_RS08615 and HER17_RS17605 in Pectobacterium carotovorum WPP14

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 1.0 HER17_RS17605 AI-2E family transporter 0.82 7
Rahnella sp. WP5 0.85 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.61 EX31_RS10955 AI-2E family transporter low > 89
Dickeya dianthicola 67-19 0.84 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.83 HGI48_RS03625 AI-2E family transporter low > 71
Dickeya dianthicola ME23 0.84 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.83 DZA65_RS03745 AI-2E family transporter low > 75
Dickeya dadantii 3937 0.84 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.84 DDA3937_RS03535 AI-2E family transporter low > 74
Erwinia tracheiphila SCR3 0.79 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.52 LU632_RS11350 AI-2E family transporter low > 74
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.46 Pf6N2E2_3560 membrane protein, putative low > 103
Pseudomonas sp. RS175 0.56 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.46 PFR28_05173 hypothetical protein low > 88
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.48 Psyr_4442 membrane protein, putative low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.48 Psyr_4442 membrane protein, putative low > 86
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_20125 23S rRNA pseudouridylate synthase 0.46 AO356_08415 hypothetical protein low > 104
Pseudomonas putida KT2440 0.55 PP_1906 ribosomal large subunit pseudouridine synthase C 0.47 PP_4850 conserved membrane protein of unknown function low > 96
Pseudomonas simiae WCS417 0.55 PS417_21480 23S rRNA pseudouridylate synthase 0.47 PS417_02770 membrane protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.48 PFLU_RS02830 AI-2E family transporter low > 109
Pseudomonas fluorescens SBW25 0.55 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.48 PFLU_RS02830 AI-2E family transporter low > 109
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_01405 23S rRNA pseudouridylate synthase 0.46 AO353_13465 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.47 Pf1N1B4_1360 membrane protein, putative — —
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.47 PfGW456L13_97 membrane protein, putative low > 87
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS04500 RluA family pseudouridine synthase 0.32 QEN71_RS01820 AI-2E family transporter low > 153
Ralstonia solanacearum UW163 0.46 UW163_RS11840 RluA family pseudouridine synthase 0.33 UW163_RS17705 AI-2E family transporter — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS14375 RluA family pseudouridine synthase 0.33 RALBFv3_RS21485 AI-2E family transporter low > 76
Paraburkholderia graminis OAS925 0.46 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase 0.35 ABIE53_000731 putative PurR-regulated permease PerM low > 113
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS14155 pseudouridine synthase 0.37 RR42_RS21305 membrane protein low > 128
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C 0.36 BPHYT_RS02965 membrane protein low > 109
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS10090 RluA family pseudouridine synthase 0.37 ABZR87_RS21915 AI-2E family transporter low > 80
Ralstonia solanacearum GMI1000 0.45 RS_RS05155 RluA family pseudouridine synthase 0.35 RS_RS19140 AI-2E family transporter — —
Rhodanobacter denitrificans MT42 0.45 LRK55_RS17750 RluA family pseudouridine synthase 0.37 LRK55_RS10430 AI-2E family transporter low > 63
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS17895 RluA family pseudouridine synthase 0.38 LRK54_RS10790 AI-2E family transporter low > 59
Ralstonia solanacearum PSI07 0.45 RPSI07_RS19085 RluA family pseudouridine synthase 0.35 RPSI07_RS01645 AI-2E family transporter low > 81
Variovorax sp. SCN45 0.45 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) 0.27 GFF3940 putative membrane protein low > 127
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase 0.34 H281DRAFT_01914 Predicted PurR-regulated permease PerM low > 103
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase 0.37 OKGIIK_13095 putative PurR-regulated permease PerM low > 52
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS02725 RluA family pseudouridine synthase 0.40 ABZR86_RS16680 AI-2E family transporter low > 74

Not shown: 50 genomes with orthologs for HER17_RS08615 only; 0 genomes with orthologs for HER17_RS17605 only