Conservation of cofitness between HER17_RS04200 and HER17_RS14145 in Pectobacterium carotovorum WPP14

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS04200 7-carboxy-7-deazaguanine synthase QueE 1.0 HER17_RS14145 glutamate/aspartate:proton symporter GltP 0.66 10
Serratia liquefaciens MT49 0.86 IAI46_03675 7-carboxy-7-deazaguanine synthase QueE 0.87 IAI46_01410 glutamate/aspartate:proton symporter GltP low > 86
Dickeya dadantii 3937 0.86 DDA3937_RS16970 7-carboxy-7-deazaguanine synthase QueE 0.85 DDA3937_RS07490 glutamate/aspartate:proton symporter GltP low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF4831 Queuosine Biosynthesis QueE Radical SAM 0.84 GFF1460 Glutamate-aspartate carrier protein low > 78
Escherichia coli BL21 0.85 ECD_02622 7-carboxy-7-deazaguanine synthase; queosine biosynthesis 0.83 ECD_03949 glutamate/aspartate:proton symporter low > 61
Escherichia coli ECRC62 0.85 BNILDI_10675 queE 7-carboxy-7-deazaguanine synthase QueE 0.83 BNILDI_06490 gltP glutamate/aspartate:proton symporter GltP low > 75
Escherichia coli ECRC98 0.85 JDDGAC_23965 queE 7-carboxy-7-deazaguanine synthase QueE 0.83 JDDGAC_16420 gltP glutamate/aspartate:proton symporter GltP low > 86
Escherichia coli BW25113 0.85 b2777 ygcF hypothetical protein (NCBI) 0.83 b4077 gltP glutamate/aspartate:proton symporter (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_00957 7-carboxy-7-deazaguanine synthase 0.83 OHPLBJKB_03963 Proton/glutamate-aspartate symporter low > 73
Escherichia coli ECRC102 0.85 NIAGMN_18070 queE 7-carboxy-7-deazaguanine synthase QueE 0.83 NIAGMN_10630 gltP glutamate/aspartate:proton symporter GltP — —
Escherichia coli ECRC100 0.85 OKFHMN_20300 queE 7-carboxy-7-deazaguanine synthase QueE 0.83 OKFHMN_12785 gltP glutamate/aspartate:proton symporter GltP low > 80
Escherichia coli ECRC101 0.85 MCAODC_10825 queE 7-carboxy-7-deazaguanine synthase QueE 0.83 MCAODC_03295 gltP glutamate/aspartate:proton symporter GltP low > 87
Escherichia coli ECRC99 0.85 KEDOAH_07830 queE 7-carboxy-7-deazaguanine synthase QueE 0.83 KEDOAH_15365 gltP glutamate/aspartate:proton symporter GltP — —
Klebsiella michiganensis M5al 0.85 BWI76_RS22780 7-carboxy-7-deazaguanine synthase QueE 0.81 BWI76_RS02105 glutamate/aspartate:proton symporter GltP low > 92
Escherichia coli ECOR27 0.85 NOLOHH_12170 queE 7-carboxy-7-deazaguanine synthase QueE 0.83 NOLOHH_05035 gltP glutamate/aspartate:proton symporter GltP low > 75
Escherichia fergusonii Becca 0.85 EFB2_01141 7-carboxy-7-deazaguanine synthase 0.83 EFB2_04512 Proton/glutamate-aspartate symporter low > 86
Escherichia coli ECOR38 0.85 HEPCGN_19205 queE 7-carboxy-7-deazaguanine synthase QueE 0.83 HEPCGN_11410 gltP glutamate/aspartate:proton symporter GltP low > 87
Escherichia coli Nissle 1917 0.85 ECOLIN_RS15475 7-carboxy-7-deazaguanine synthase QueE 0.83 ECOLIN_RS23590 glutamate/aspartate:proton symporter GltP low > 55
Enterobacter sp. TBS_079 0.84 MPMX20_03645 7-carboxy-7-deazaguanine synthase 0.81 MPMX20_00292 Proton/glutamate-aspartate symporter low > 85
Enterobacter asburiae PDN3 0.84 EX28DRAFT_2855 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 0.83 EX28DRAFT_4231 Na+/H+-dicarboxylate symporters low > 76
Erwinia tracheiphila SCR3 0.84 LU632_RS06390 queE 7-carboxy-7-deazaguanine synthase QueE 0.84 LU632_RS23310 gltP glutamate/aspartate:proton symporter GltP low > 74
Pantoea sp. MT58 0.80 IAI47_04140 7-carboxy-7-deazaguanine synthase QueE 0.83 IAI47_17710 glutamate/aspartate:proton symporter GltP low > 76
Dickeya dianthicola 67-19 0.79 HGI48_RS17035 7-carboxy-7-deazaguanine synthase QueE 0.85 HGI48_RS07365 glutamate/aspartate:proton symporter GltP low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS18110 7-carboxy-7-deazaguanine synthase QueE 0.85 DZA65_RS07875 glutamate/aspartate:proton symporter GltP low > 75
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_06870 7-carboxy-7-deazaguanine synthase QueE 0.29 CSW01_05920 dicarboxylate/amino acid:cation symporter low > 62
Shewanella sp. ANA-3 0.61 Shewana3_2163 radical activating enzyme (RefSeq) 0.33 Shewana3_3362 sodium:dicarboxylate symporter (RefSeq) low > 73
Shewanella loihica PV-4 0.61 Shew_2061 radical SAM domain-containing protein (RefSeq) 0.33 Shew_0743 sodium:dicarboxylate symporter (RefSeq) low > 60
Shewanella oneidensis MR-1 0.60 SO2501 radical activating enzyme (NCBI ptt file) 0.33 SO0922 proton/glutamate symporter (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.58 Sama_1825 radical activating enzyme (RefSeq) 0.31 Sama_2768 proton/glutamate symporter (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.58 MIT1002_01264 7-carboxy-7-deazaguanine synthase 0.31 MIT1002_01542 Glutamate-aspartate carrier protein low > 70
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_4642 Organic radical activating enzymes 0.28 Echvi_1519 Na+/H+-dicarboxylate symporters low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.24 CA264_07135 7-carboxy-7-deazaguanine synthase QueE 0.35 CA264_01055 dicarboxylate/amino acid:cation symporter low > 74
Pseudomonas simiae WCS417 0.18 PS417_22405 7-carboxy-7-deazaguanine synthase 0.74 PS417_00470 glutamate:protein symporter low > 88
Pseudomonas fluorescens SBW25-INTG 0.18 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE 0.75 PFLU_RS00460 glutamate/aspartate:proton symporter GltP 0.45 4
Pseudomonas fluorescens SBW25 0.18 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE 0.75 PFLU_RS00460 glutamate/aspartate:proton symporter GltP low > 109
Pseudomonas sp. RS175 0.17 PFR28_03404 7-carboxy-7-deazaguanine synthase 0.72 PFR28_04638 Proton/glutamate-aspartate symporter low > 88
Pseudomonas fluorescens FW300-N2C3 0.17 AO356_18065 7-carboxy-7-deazaguanine synthase 0.73 AO356_11400 glutamate:protein symporter 0.24 73
Pseudomonas fluorescens FW300-N2E2 0.17 Pf6N2E2_5545 Queuosine Biosynthesis QueE Radical SAM 0.72 Pf6N2E2_4148 Glutamate-aspartate carrier protein low > 103
Pseudomonas fluorescens FW300-N1B4 0.17 Pf1N1B4_629 Queuosine Biosynthesis QueE Radical SAM 0.71 Pf1N1B4_1888 Glutamate-aspartate carrier protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.17 AO353_03540 7-carboxy-7-deazaguanine synthase 0.72 AO353_10990 glutamate:protein symporter low > 101
Rhodanobacter sp. FW510-T8 0.16 OKGIIK_01890 7-carboxy-7-deazaguanine synthase 0.17 OKGIIK_06560 gltP dicarboxylate/amino acid:cation symporter low > 52
Pseudomonas putida KT2440 0.16 PP_1225 7-carboxy-7-deazaguanine synthase 0.70 PP_0137 glutamate/aspartate-proton DAACS transporter low > 96
Pseudomonas fluorescens GW456-L13 0.16 PfGW456L13_1861 Queuosine Biosynthesis QueE Radical SAM 0.72 PfGW456L13_578 Glutamate-aspartate carrier protein 0.37 8
Pseudomonas stutzeri RCH2 0.15 Psest_1505 Organic radical activating enzymes 0.29 Psest_4075 symporter for L-glutamate, L-glutamine, and L-proline (from data) low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.15 Psyr_1418 Radical SAM 0.75 Psyr_0174 Sodium:dicarboxylate symporter — —
Pseudomonas syringae pv. syringae B728a 0.15 Psyr_1418 Radical SAM 0.75 Psyr_0174 Sodium:dicarboxylate symporter low > 86
Marinobacter adhaerens HP15 0.15 HP15_3815 organic radical activating enzyme 0.25 HP15_2676 proton/sodium-glutamate symport protein low > 73

Not shown: 37 genomes with orthologs for HER17_RS04200 only; 4 genomes with orthologs for HER17_RS14145 only