Conservation of cofitness between HER17_RS00910 and HER17_RS10940 in Pectobacterium carotovorum WPP14

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS00910 cystathionine gamma-synthase 1.0 HER17_RS10940 tryptophan synthase subunit alpha 0.97 18
Dickeya dianthicola 67-19 0.92 HGI48_RS20425 cystathionine gamma-synthase 0.81 HGI48_RS10460 tryptophan synthase subunit alpha low > 71
Dickeya dadantii 3937 0.92 DDA3937_RS00950 cystathionine gamma-synthase 0.81 DDA3937_RS10460 tryptophan synthase subunit alpha low > 74
Dickeya dianthicola ME23 0.92 DZA65_RS21470 cystathionine gamma-synthase 0.81 DZA65_RS10940 tryptophan synthase subunit alpha low > 75
Escherichia coli BW25113 0.87 b3939 metB cystathionine gamma-synthase (NCBI) 0.77 b1260 trpA tryptophan synthase subunit alpha (NCBI) 0.85 34
Escherichia coli ECRC62 0.87 BNILDI_05715 metB cystathionine gamma-synthase 0.77 BNILDI_18480 trpA tryptophan synthase subunit alpha 0.93 53
Klebsiella michiganensis M5al 0.87 BWI76_RS00785 cystathionine gamma-synthase 0.77 BWI76_RS11840 tryptophan synthase subunit alpha 0.90 19
Escherichia coli HS(pFamp)R (ATCC 700891) 0.87 OHPLBJKB_04111 Cystathionine gamma-synthase 0.77 OHPLBJKB_02423 Tryptophan synthase alpha chain low > 73
Escherichia coli ECOR27 0.87 NOLOHH_05820 metB cystathionine gamma-synthase 0.77 NOLOHH_20335 trpA tryptophan synthase subunit alpha 0.85 66
Escherichia coli BL21 0.87 ECD_03825 cystathionine gamma-synthase, PLP-dependent 0.77 ECD_01234 tryptophan synthase, alpha subunit low > 61
Enterobacter asburiae PDN3 0.87 EX28DRAFT_4411 cystathionine gamma-synthase (EC 2.5.1.48) 0.77 EX28DRAFT_0932 tryptophan synthase, alpha chain (EC 4.2.1.20) low > 76
Escherichia coli Nissle 1917 0.87 ECOLIN_RS22725 cystathionine gamma-synthase 0.77 ECOLIN_RS07595 tryptophan synthase subunit alpha — —
Escherichia coli ECOR38 0.87 HEPCGN_12345 metB cystathionine gamma-synthase 0.77 HEPCGN_25515 trpA tryptophan synthase subunit alpha 0.86 62
Escherichia fergusonii Becca 0.87 EFB2_04679 Cystathionine gamma-synthase 0.77 EFB2_02666 Tryptophan synthase alpha chain low > 86
Enterobacter sp. TBS_079 0.87 MPMX20_04531 Cystathionine gamma-synthase 0.77 MPMX20_02514 Tryptophan synthase alpha chain 0.90 31
Escherichia coli ECRC98 0.87 JDDGAC_17300 metB cystathionine gamma-synthase 0.77 JDDGAC_05220 trpA tryptophan synthase subunit alpha 0.91 33
Escherichia coli ECRC100 0.87 OKFHMN_13675 metB cystathionine gamma-synthase 0.77 OKFHMN_02675 trpA tryptophan synthase subunit alpha 0.87 70
Escherichia coli ECRC102 0.87 NIAGMN_11430 metB cystathionine gamma-synthase 0.77 NIAGMN_26845 trpA tryptophan synthase subunit alpha — —
Escherichia coli ECRC99 0.87 KEDOAH_14485 metB cystathionine gamma-synthase 0.77 KEDOAH_26075 trpA tryptophan synthase subunit alpha — —
Escherichia coli ECRC101 0.87 MCAODC_04175 metB cystathionine gamma-synthase 0.77 MCAODC_15590 trpA tryptophan synthase subunit alpha 0.85 50
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF2323 Cystathionine gamma-synthase (EC 2.5.1.48) 0.77 GFF2726 Tryptophan synthase alpha chain (EC 4.2.1.20) low > 78
Erwinia tracheiphila SCR3 0.85 LU632_RS19640 metB cystathionine gamma-synthase 0.71 LU632_RS12775 trpA tryptophan synthase subunit alpha low > 74
Serratia liquefaciens MT49 0.84 IAI46_24540 cystathionine gamma-synthase 0.81 IAI46_14045 tryptophan synthase subunit alpha low > 86
Pantoea sp. MT58 0.79 IAI47_00880 cystathionine gamma-synthase 0.74 IAI47_09165 tryptophan synthase subunit alpha 0.95 27
Rahnella sp. WP5 0.77 EX31_RS14215 cystathionine gamma-synthase 0.77 EX31_RS09980 tryptophan synthase subunit alpha 0.97 25
Shewanella amazonensis SB2B 0.61 Sama_3171 cystathionine gamma-synthase (RefSeq) 0.57 Sama_2134 trpA tryptophan synthase subunit alpha (RefSeq) 0.92 50
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_13550 O-succinylhomoserine (thiol)-lyase 0.63 CSW01_05925 tryptophan synthase subunit alpha low > 62
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_2459 cystathionine gamma-synthase (EC 2.5.1.48) 0.46 B158DRAFT_2430 tryptophan synthase, alpha chain (EC 4.2.1.20) low > 40
Shewanella loihica PV-4 0.60 Shew_0520 O-succinylhomoserine (thiol)-lyase (RefSeq) 0.59 Shew_2256 trpA tryptophan synthase subunit alpha (RefSeq) 0.92 38
Shewanella sp. ANA-3 0.59 Shewana3_3614 cystathionine gamma-synthase (RefSeq) 0.61 Shewana3_1515 trpA tryptophan synthase subunit alpha (RefSeq) 0.91 40
Shewanella oneidensis MR-1 0.58 SO4056 metB cystathionine gamma-synthase (NCBI ptt file) 0.61 SO3024 trpA tryptophan synthase, alpha subunit (NCBI ptt file) 0.90 51
Lysobacter sp. OAE881 0.58 ABIE51_RS16185 O-succinylhomoserine (thiol)-lyase 0.29 ABIE51_RS08265 tryptophan synthase subunit alpha 0.87 60
Rhodanobacter denitrificans MT42 0.57 LRK55_RS05085 cystathionine gamma-synthase 0.27 LRK55_RS01460 tryptophan synthase subunit alpha low > 63
Brevundimonas sp. GW460-12-10-14-LB2 0.57 A4249_RS16160 cystathionine gamma-synthase 0.23 A4249_RS11320 tryptophan synthase subunit alpha — —
Rhodanobacter denitrificans FW104-10B01 0.56 LRK54_RS05305 cystathionine gamma-synthase 0.27 LRK54_RS01680 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) low > 59
Xanthomonas campestris pv. campestris strain 8004 0.55 Xcc-8004.1596.1 hypothetical protein 0.23 Xcc-8004.1967.1 Tryptophan synthase alpha chain (EC 4.2.1.20) low > 74
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS19030 cystathionine gamma-synthase 0.27 ABZR86_RS07995 tryptophan synthase subunit alpha 0.89 66
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_01515 metB cystathionine gamma-synthase 0.27 OKGIIK_04850 trpA tryptophan synthase subunit alpha low > 52
Sinorhizobium meliloti 1021 0.50 SMc02595 cystathionine gamma-synthase 0.23 SMc02765 tryptophan synthase subunit alpha low > 103
Acinetobacter radioresistens SK82 0.34 MPMX26_01645 O-succinylhomoserine sulfhydrylase 0.25 MPMX26_02611 Tryptophan synthase alpha chain — —
Variovorax sp. OAS795 0.30 ABID97_RS21630 O-succinylhomoserine sulfhydrylase 0.25 ABID97_RS08425 tryptophan synthase subunit alpha — —
Dinoroseobacter shibae DFL-12 0.30 Dshi_1002 Cystathionine gamma-synthase (RefSeq) 0.29 Dshi_0952 tryptophan synthase, alpha subunit (RefSeq) — —

Not shown: 0 genomes with orthologs for HER17_RS00910 only; 61 genomes with orthologs for HER17_RS10940 only