Conservation of cofitness between HER17_RS04235 and HER17_RS10870 in Pectobacterium carotovorum WPP14

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS04235 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 1.0 HER17_RS10870 HTH-type transcriptional regulator CysB 0.91 18
Dickeya dadantii 3937 0.80 DDA3937_RS16945 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.95 DDA3937_RS10540 HTH-type transcriptional regulator CysB low > 74
Dickeya dianthicola 67-19 0.79 HGI48_RS17015 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.95 HGI48_RS10540 HTH-type transcriptional regulator CysB low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS18090 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.95 DZA65_RS11020 HTH-type transcriptional regulator CysB 0.84 3
Serratia liquefaciens MT49 0.78 IAI46_03685 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.93 IAI46_13965 HTH-type transcriptional regulator CysB — —
Pantoea sp. MT58 0.78 IAI47_04150 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.90 IAI47_09240 HTH-type transcriptional regulator CysB low > 76
Rahnella sp. WP5 0.77 EX31_RS07905 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.93 EX31_RS09890 HTH-type transcriptional regulator CysB 0.97 4
Enterobacter asburiae PDN3 0.77 EX28DRAFT_2853 sulfite reductase [NADPH] flavoprotein, alpha-component 0.91 EX28DRAFT_0946 Transcriptional regulator — —
Escherichia coli ECRC62 0.75 BNILDI_10735 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.91 BNILDI_18415 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECOR27 0.75 NOLOHH_12185 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.91 NOLOHH_20265 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli BW25113 0.75 b2764 cysJ sulfite reductase, alpha subunit, flavoprotein (NCBI) 0.91 b1275 cysB DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding (NCBI) — —
Escherichia coli BL21 0.75 ECD_02609 sulfite reductase, alpha subunit, flavoprotein 0.91 ECD_01251 N-acetylserine-responsive cysteine regulon transcriptional activator; autorepressor — —
Enterobacter sp. TBS_079 0.75 MPMX20_03643 Sulfite reductase [NADPH] flavoprotein alpha-component 0.91 MPMX20_02501 HTH-type transcriptional regulator CysB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_00969 Sulfite reductase [NADPH] flavoprotein alpha-component 0.91 OHPLBJKB_02409 HTH-type transcriptional regulator CysB low > 73
Escherichia fergusonii Becca 0.75 EFB2_01153 Sulfite reductase [NADPH] flavoprotein alpha-component 0.91 EFB2_02652 HTH-type transcriptional regulator CysB — —
Escherichia coli Nissle 1917 0.75 ECOLIN_RS15410 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.91 ECOLIN_RS07680 HTH-type transcriptional regulator CysB low > 55
Escherichia coli ECOR38 0.75 HEPCGN_19095 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.91 HEPCGN_25600 cysB HTH-type transcriptional regulator CysB 0.75 83
Klebsiella michiganensis M5al 0.74 BWI76_RS22765 sulfite reductase subunit alpha 0.92 BWI76_RS11930 LysR family transcriptional regulator CysB — —
Escherichia coli ECRC100 0.74 OKFHMN_20370 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.91 OKFHMN_02600 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECRC99 0.74 KEDOAH_07755 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.91 KEDOAH_26165 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECRC98 0.74 JDDGAC_24035 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.91 JDDGAC_05145 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECRC101 0.74 MCAODC_10895 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.91 MCAODC_15665 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECRC102 0.74 NIAGMN_18140 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.91 NIAGMN_26770 cysB HTH-type transcriptional regulator CysB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF4820 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) 0.91 GFF2712 Cys regulon transcriptional activator CysB — —
Erwinia tracheiphila SCR3 0.73 LU632_RS06400 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.92 LU632_RS12550 cysB HTH-type transcriptional regulator CysB — —
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_02010 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.80 CSW01_09545 HTH-type transcriptional regulator CysB — —
Shewanella amazonensis SB2B 0.49 Sama_2839 sulfite reductase subunit alpha (RefSeq) 0.75 Sama_1324 cysB transcriptional regulator CysB (RefSeq) — —
Shewanella oneidensis MR-1 0.49 SO3738 cysJ sulfite reductase (NADPH) flavoprotein alpha-component (NCBI ptt file) 0.75 SO2649 cysB cys regulon transcriptional activator (NCBI ptt file) 0.86 76
Shewanella loihica PV-4 0.49 Shew_0665 sulfite reductase (NADPH) flavoprotein, alpha chain (RefSeq) 0.75 Shew_1624 cysB transcriptional regulator CysB (RefSeq) — —
Shewanella sp. ANA-3 0.48 Shewana3_0855 sulfite reductase (NADPH) alpha subunit (RefSeq) 0.75 Shewana3_1731 cysB transcriptional regulator CysB (RefSeq) — —
Alteromonas macleodii MIT1002 0.47 MIT1002_03380 Sulfite reductase [NADPH] flavoprotein alpha-component 0.78 MIT1002_02005 Cys regulon transcriptional activator — —
Lysobacter sp. OAE881 0.43 ABIE51_RS15825 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.34 ABIE51_RS15850 LysR family transcriptional regulator 0.98 4
Castellaniella sp019104865 MT123 0.39 ABCV34_RS00220 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.40 ABCV34_RS08230 CysB family HTH-type transcriptional regulator low > 48
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_05960 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.37 OKGIIK_05975 lysR CysB family transcriptional regulator 0.66 26
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS05905 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.35 ABZR86_RS05885 LysR substrate-binding domain-containing protein 0.97 3
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS00930 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.36 LRK54_RS00915 LysR substrate-binding domain-containing protein 0.57 10
Rhodanobacter denitrificans MT42 0.37 LRK55_RS00705 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.36 LRK55_RS00690 LysR substrate-binding domain-containing protein low > 63
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_2160 sulfite reductase (NADPH) alpha subunit (EC 1.8.1.2) 0.43 B158DRAFT_2455 Transcriptional regulator low > 40
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.1258.1 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) 0.30 Xcc-8004.1249.1 Transcriptional regulator 0.77 23
Pseudomonas stutzeri RCH2 0.13 Psest_3345 Sulfite reductase, alpha subunit (flavoprotein) 0.66 Psest_2329 Transcriptional regulator low > 67

Not shown: 3 genomes with orthologs for HER17_RS04235 only; 20 genomes with orthologs for HER17_RS10870 only