Conservation of cofitness between HER17_RS11350 and HER17_RS08355 in Pectobacterium carotovorum WPP14

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS11350 23S rRNA (guanine(745)-N(1))-methyltransferase 1.0 HER17_RS08355 RNA polymerase sigma factor FliA 0.69 18
Dickeya dadantii 3937 0.64 DDA3937_RS11305 23S rRNA (guanine(745)-N(1))-methyltransferase 0.95 DDA3937_RS13300 RNA polymerase sigma factor FliA low > 74
Dickeya dianthicola 67-19 0.64 HGI48_RS11340 23S rRNA (guanine(745)-N(1))-methyltransferase 0.94 HGI48_RS13350 RNA polymerase sigma factor FliA low > 71
Dickeya dianthicola ME23 0.63 DZA65_RS11685 23S rRNA (guanine(745)-N(1))-methyltransferase 0.94 DZA65_RS13835 RNA polymerase sigma factor FliA low > 75
Serratia liquefaciens MT49 0.61 IAI46_14835 23S rRNA (guanine(745)-N(1))-methyltransferase 0.86 IAI46_15785 RNA polymerase sigma factor FliA low > 86
Rahnella sp. WP5 0.61 EX31_RS24675 23S rRNA (guanine(745)-N(1))-methyltransferase 0.87 EX31_RS09450 RNA polymerase sigma factor FliA low > 89
Enterobacter sp. TBS_079 0.60 MPMX20_02727 23S rRNA (guanine(745)-N(1))-methyltransferase 0.82 MPMX20_02847 RNA polymerase sigma factor FliA low > 85
Enterobacter asburiae PDN3 0.59 EX28DRAFT_0737 Methyltransferase domain 0.82 EX28DRAFT_0625 RNA polymerase sigma factor, FliA/WhiG family low > 76
Escherichia coli ECRC62 0.57 BNILDI_15805 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.81 BNILDI_15190 fliA RNA polymerase sigma factor FliA low > 75
Escherichia coli BW25113 0.57 b1822 rrmA 23S rRNA m1G745 methyltransferase (NCBI) 0.81 b1922 fliA flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) low > 76
Escherichia fergusonii Becca 0.57 EFB2_02178 23S rRNA (guanine(745)-N(1))-methyltransferase 0.81 EFB2_02023 RNA polymerase sigma factor FliA low > 86
Escherichia coli Nissle 1917 0.57 ECOLIN_RS10140 23S rRNA (guanine(745)-N(1))-methyltransferase 0.81 ECOLIN_RS10975 RNA polymerase sigma factor FliA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_01908 23S rRNA (guanine(745)-N(1))-methyltransferase 0.81 OHPLBJKB_01807 RNA polymerase sigma factor FliA low > 73
Escherichia coli ECOR38 0.57 HEPCGN_04900 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.81 HEPCGN_04135 fliA RNA polymerase sigma factor FliA low > 87
Escherichia coli ECRC101 0.56 MCAODC_18905 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.81 MCAODC_19610 fliA RNA polymerase sigma factor FliA low > 87
Escherichia coli ECRC99 0.56 KEDOAH_01605 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.81 KEDOAH_02310 fliA RNA polymerase sigma factor FliA — —
Escherichia coli ECRC98 0.56 JDDGAC_01075 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.81 JDDGAC_00370 fliA RNA polymerase sigma factor FliA low > 86
Escherichia coli ECRC102 0.56 NIAGMN_01560 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.81 NIAGMN_02270 fliA RNA polymerase sigma factor FliA — —
Escherichia coli ECRC100 0.56 OKFHMN_26500 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.81 OKFHMN_25780 fliA RNA polymerase sigma factor FliA low > 80
Escherichia coli ECOR27 0.56 NOLOHH_17025 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.81 NOLOHH_16400 fliA RNA polymerase sigma factor FliA low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2836 Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51) 0.82 GFF1690 RNA polymerase sigma factor for flagellar operon low > 78
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_10000 23S rRNA (guanine(745)-N(1))-methyltransferase 0.43 CSW01_10335 RNA polymerase sigma factor FliA low > 62
Pantoea sp. MT58 0.53 IAI47_08750 23S rRNA (guanine(745)-N(1))-methyltransferase 0.85 IAI47_08160 RNA polymerase sigma factor FliA low > 76
Erwinia tracheiphila SCR3 0.52 LU632_RS13200 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.86 LU632_RS13785 RNA polymerase sigma factor FliA low > 74
Shewanella sp. ANA-3 0.43 Shewana3_2570 rrmA 23S rRNA methyltransferase A (RefSeq) 0.41 Shewana3_1359 fliA flagellar biosynthesis sigma factor (RefSeq) low > 73
Shewanella oneidensis MR-1 0.42 SO2788 rrmA ribosomal RNA large subunit methyltransferase A (NCBI ptt file) 0.41 SO3210 fliA RNA polymerase sigma-27 factor (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.41 Shew_1613 rrmA 23S rRNA methyltransferase A (RefSeq) 0.42 Shew_1383 fliA flagellar biosynthesis sigma factor (RefSeq) low > 60
Shewanella amazonensis SB2B 0.39 Sama_1971 rrmA 23S rRNA methyltransferase A (RefSeq) 0.42 Sama_2280 fliA flagellar biosynthesis sigma factor (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.33 MIT1002_01980 23S rRNA (guanine(745)-N(1))-methyltransferase 0.42 MIT1002_01103 Sigma-F factor low > 70
Pseudomonas putida KT2440 0.31 PP_1524 23S rRNA m1G745 methyltransferase 0.43 PP_4341 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons low > 96
Pseudomonas stutzeri RCH2 0.31 Psest_1617 Methylase involved in ubiquinone/menaquinone biosynthesis 0.45 Psest_1740 RNA polymerase sigma factor, FliA/WhiG family low > 67
Pseudomonas sp. S08-1 0.31 OH686_06565 23S rRNA (guanine(745)-N(1))-methyltransferase 0.45 OH686_02730 RNA polymerase sigma factor for flagellar operon low > 80
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_4722 Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51) 0.43 PfGW456L13_4331 RNA polymerase sigma factor for flagellar operon low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_1330 23S rRNA m(1)G-745 methyltransferase 0.44 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG low > 86
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_16405 SAM-dependent methyltransferase 0.44 AO353_18785 flagellar biosynthesis sigma factor low > 101
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_1330 23S rRNA m(1)G-745 methyltransferase 0.44 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG low > 86
Pseudomonas sp. RS175 0.29 PFR28_00385 23S rRNA (guanine(745)-N(1))-methyltransferase 0.44 PFR28_00852 RNA polymerase sigma factor FliA low > 88
Pseudomonas simiae WCS417 0.29 PS417_06150 SAM-dependent methlyltransferase 0.43 PS417_19695 flagellar biosynthesis sigma factor low > 88
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_3070 Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51) 0.44 Pf1N1B4_3626 RNA polymerase sigma factor for flagellar operon low > 87
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_3084 Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51) 0.43 Pf6N2E2_2573 RNA polymerase sigma factor for flagellar operon low > 103
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_06095 SAM-dependent methyltransferase 0.43 AO356_03730 flagellar biosynthesis sigma factor low > 104
Pseudomonas fluorescens SBW25 0.28 PFLU_RS06215 methyltransferase domain-containing protein 0.43 PFLU_RS21660 RNA polymerase sigma factor FliA low > 109
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS06215 methyltransferase domain-containing protein 0.43 PFLU_RS21660 RNA polymerase sigma factor FliA 0.15 25
Marinobacter adhaerens HP15 0.27 HP15_1754 rRNA (guanine-N1-)-methyltransferase A, predicted 0.47 HP15_2302 flagellar biosynthesis sigma factor FliA low > 73

Not shown: 3 genomes with orthologs for HER17_RS11350 only; 26 genomes with orthologs for HER17_RS08355 only