Conservation of cofitness between HER17_RS15240 and HER17_RS04720 in Pectobacterium carotovorum WPP14

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 1.0 HER17_RS04720 tyrosine-type recombinase/integrase 0.56 20
Dickeya dadantii 3937 0.98 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.65 DDA3937_RS16520 tyrosine-type recombinase/integrase — —
Dickeya dianthicola 67-19 0.97 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 HGI48_RS14775 tyrosine-type recombinase/integrase — —
Rahnella sp. WP5 0.95 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.65 EX31_RS20945 tyrosine-type recombinase/integrase low > 89
Serratia liquefaciens MT49 0.95 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.66 IAI46_05415 tyrosine-type recombinase/integrase low > 86
Pantoea sp. MT58 0.92 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 IAI47_06050 tyrosine-type recombinase/integrase low > 76
Enterobacter asburiae PDN3 0.91 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.78 EX28DRAFT_2648 Integrase — —
Escherichia coli Nissle 1917 0.90 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 ECOLIN_RS26185 integrase arm-type DNA-binding domain-containing protein — —
Escherichia coli BL21 0.90 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.64 ECD_03516 Int — —
Escherichia coli BW25113 0.90 b0636 ybeA hypothetical protein (NCBI) 0.45 b2349 intS CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) low > 76
Klebsiella michiganensis M5al 0.90 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.77 BWI76_RS05825 putative site specific integrase low > 92
Erwinia tracheiphila SCR3 0.90 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 LU632_RS07185 tyrosine-type recombinase/integrase low > 74
Escherichia coli ECRC62 0.90 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.62 BNILDI_09605 integrase — —
Escherichia coli ECRC100 0.90 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.78 OKFHMN_09385 fimB integrase low > 80
Escherichia coli ECRC101 0.90 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 MCAODC_06015 fimB integrase low > 87
Escherichia coli ECRC99 0.90 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 KEDOAH_12640 fimB integrase — —
Escherichia coli ECOR38 0.90 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.63 HEPCGN_14290 fimB integrase low > 87
Escherichia fergusonii Becca 0.90 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.63 EFB2_00121 Prophage integrase IntS low > 86
Escherichia coli ECRC102 0.90 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.78 NIAGMN_07435 fimB integrase — —
Escherichia coli ECRC98 0.90 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.78 JDDGAC_13020 fimB integrase — —
Alteromonas macleodii MIT1002 0.79 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.17 MIT1002_04073 Putative prophage CPS-53 integrase — —
Pseudomonas sp. S08-1 0.63 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.41 OH686_21775 Phage integrase low > 80
Pseudomonas stutzeri RCH2 0.61 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.58 Psest_4016 Integrase low > 67
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.27 Pf1N1B4_3004 Integrase — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_06480 50S rRNA methyltransferase 0.37 AO353_11495 integrase low > 101
Pseudomonas fluorescens SBW25 0.61 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 PFLU_RS00900 tyrosine-type recombinase/integrase low > 109
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 PFLU_RS00900 tyrosine-type recombinase/integrase low > 109
Pseudomonas simiae WCS417 0.61 PS417_24730 50S rRNA methyltransferase 0.39 PS417_10250 integrase — —
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 OKGIIK_15870 integrase low > 52
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 QEN71_RS10240 tyrosine-type recombinase/integrase low > 153
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.39 ABZR86_RS02275 integrase arm-type DNA-binding domain-containing protein low > 74
Paraburkholderia graminis OAS925 0.50 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.38 ABIE53_000475 integrase — —
Lysobacter sp. OAE881 0.50 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.31 ABIE51_RS08660 site-specific integrase low > 62
Rhodanobacter denitrificans MT42 0.50 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 LRK55_RS10445 tyrosine-type recombinase/integrase low > 63
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.37 H281DRAFT_02146 Integrase low > 103
Acinetobacter radioresistens SK82 0.48 MPMX26_02301 Ribosomal RNA large subunit methyltransferase H 0.36 MPMX26_02861 Prophage integrase IntS low > 36
Ralstonia solanacearum GMI1000 0.46 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.46 RS_RS04790 DUF4102 domain-containing protein — —
Ralstonia solanacearum PSI07 0.46 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.29 RPSI07_RS12430 DUF4102 domain-containing protein low > 81
Dechlorosoma suillum PS 0.45 Dsui_0451 hypothetical protein 0.43 Dsui_0218 Integrase low > 51
Azospirillum sp. SherDot2 0.27 MPMX19_01940 Ribosomal RNA large subunit methyltransferase H 0.15 MPMX19_02360 Prophage integrase IntA low > 112
Azospirillum brasilense Sp245 0.26 AZOBR_RS04060 50S rRNA methyltransferase 0.13 AZOBR_RS30360 integrase low > 97
Desulfovibrio vulgaris Hildenborough JW710 0.22 DVU1254 conserved hypothetical protein (TIGR) 0.40 DVU1527 site-specific recombinase, phage integrase family (TIGR) low > 55

Not shown: 55 genomes with orthologs for HER17_RS15240 only; 0 genomes with orthologs for HER17_RS04720 only