Conservation of cofitness between HER17_RS06930 and HER17_RS04235 in Pectobacterium carotovorum WPP14

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS06930 50S ribosomal protein L3 N(5)-glutamine methyltransferase 1.0 HER17_RS04235 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.91 1
Dickeya dadantii 3937 0.90 DDA3937_RS14585 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.80 DDA3937_RS16945 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 74
Dickeya dianthicola 67-19 0.90 HGI48_RS14535 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.79 HGI48_RS17015 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 71
Dickeya dianthicola ME23 0.90 DZA65_RS15470 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.79 DZA65_RS18090 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 75
Serratia liquefaciens MT49 0.86 IAI46_18030 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.78 IAI46_03685 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 86
Enterobacter asburiae PDN3 0.85 EX28DRAFT_0274 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.77 EX28DRAFT_2853 sulfite reductase [NADPH] flavoprotein, alpha-component low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_03265 50S ribosomal protein L3 glutamine methyltransferase 0.75 MPMX20_03643 Sulfite reductase [NADPH] flavoprotein alpha-component 0.27 7
Rahnella sp. WP5 0.84 EX31_RS19690 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.77 EX31_RS07905 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.67 19
Klebsiella michiganensis M5al 0.84 BWI76_RS20440 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.74 BWI76_RS22765 sulfite reductase subunit alpha 0.58 4
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF1951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.74 GFF4820 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) low > 78
Escherichia fergusonii Becca 0.82 EFB2_01528 50S ribosomal protein L3 glutamine methyltransferase 0.75 EFB2_01153 Sulfite reductase [NADPH] flavoprotein alpha-component low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_01375 50S ribosomal protein L3 glutamine methyltransferase 0.75 OHPLBJKB_00969 Sulfite reductase [NADPH] flavoprotein alpha-component low > 73
Escherichia coli BW25113 0.82 b2330 yfcB putative adenine-specific methylase (VIMSS) 0.75 b2764 cysJ sulfite reductase, alpha subunit, flavoprotein (NCBI) low > 76
Escherichia coli ECRC101 0.82 MCAODC_13650 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.74 MCAODC_10895 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 87
Escherichia coli ECRC99 0.82 KEDOAH_05585 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.74 KEDOAH_07755 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit
Escherichia coli ECRC98 0.82 JDDGAC_26570 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.74 JDDGAC_24035 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 86
Escherichia coli ECRC100 0.82 OKFHMN_22610 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.74 OKFHMN_20370 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 80
Escherichia coli Nissle 1917 0.82 ECOLIN_RS13495 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.75 ECOLIN_RS15410 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 55
Escherichia coli ECRC102 0.82 NIAGMN_20385 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.74 NIAGMN_18140 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit
Erwinia tracheiphila SCR3 0.82 LU632_RS07770 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.73 LU632_RS06400 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 74
Escherichia coli BL21 0.82 ECD_02255 N5-glutamine methyltransferase 0.75 ECD_02609 sulfite reductase, alpha subunit, flavoprotein low > 61
Escherichia coli ECOR38 0.82 HEPCGN_21815 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.75 HEPCGN_19095 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 87
Pantoea sp. MT58 0.82 IAI47_06145 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.78 IAI47_04150 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 76
Escherichia coli ECRC62 0.82 BNILDI_13165 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.75 BNILDI_10735 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.77 26
Escherichia coli ECOR27 0.81 NOLOHH_14245 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.75 NOLOHH_12185 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 75
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_10570 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.53 CSW01_02010 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 62
Shewanella loihica PV-4 0.64 Shew_2417 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) 0.49 Shew_0665 sulfite reductase (NADPH) flavoprotein, alpha chain (RefSeq) low > 60
Shewanella amazonensis SB2B 0.63 Sama_2160 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) 0.49 Sama_2839 sulfite reductase subunit alpha (RefSeq) low > 62
Shewanella sp. ANA-3 0.63 Shewana3_1468 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) 0.48 Shewana3_0855 sulfite reductase (NADPH) alpha subunit (RefSeq) low > 73
Shewanella oneidensis MR-1 0.60 SO3080 hemK family protein (NCBI ptt file) 0.49 SO3738 cysJ sulfite reductase (NADPH) flavoprotein alpha-component (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.58 MIT1002_01228 50S ribosomal protein L3 glutamine methyltransferase 0.47 MIT1002_03380 Sulfite reductase [NADPH] flavoprotein alpha-component
Pseudomonas stutzeri RCH2 0.55 Psest_1995 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.13 Psest_3345 Sulfite reductase, alpha subunit (flavoprotein) low > 67
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_1297 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase (EC 2.1.1.-) 0.36 B158DRAFT_2160 sulfite reductase (NADPH) alpha subunit (EC 1.8.1.2) low > 40
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.1953.1 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.35 Xcc-8004.1258.1 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) low > 74
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS08050 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.38 ABZR86_RS05905 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 74
Castellaniella sp019104865 MT123 0.45 ABCV34_RS05175 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.39 ABCV34_RS00220 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 48
Rhodanobacter denitrificans MT42 0.44 LRK55_RS01515 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.37 LRK55_RS00705 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 63
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS01735 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.37 LRK54_RS00930 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 59
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_04795 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.38 OKGIIK_05960 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 52
Lysobacter sp. OAE881 0.42 ABIE51_RS08215 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.43 ABIE51_RS15825 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 62

Not shown: 34 genomes with orthologs for HER17_RS06930 only; 3 genomes with orthologs for HER17_RS04235 only