Conservation of cofitness between HER17_RS00910 and HER17_RS03080 in Pectobacterium carotovorum WPP14

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS00910 cystathionine gamma-synthase 1.0 HER17_RS03080 3-isopropylmalate dehydrogenase 0.97 20
Dickeya dianthicola 67-19 0.92 HGI48_RS20425 cystathionine gamma-synthase 0.93 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.83 38
Dickeya dadantii 3937 0.92 DDA3937_RS00950 cystathionine gamma-synthase 0.93 DDA3937_RS18120 3-isopropylmalate dehydrogenase low > 74
Dickeya dianthicola ME23 0.92 DZA65_RS21470 cystathionine gamma-synthase 0.93 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.88 18
Escherichia coli BW25113 0.87 b3939 metB cystathionine gamma-synthase (NCBI) 0.88 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.90 13
Escherichia coli HS(pFamp)R (ATCC 700891) 0.87 OHPLBJKB_04111 Cystathionine gamma-synthase 0.88 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia coli ECRC62 0.87 BNILDI_05715 metB cystathionine gamma-synthase 0.88 BNILDI_08545 leuA 2-isopropylmalate synthase 0.95 41
Escherichia coli ECOR27 0.87 NOLOHH_05820 metB cystathionine gamma-synthase 0.88 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.92 33
Klebsiella michiganensis M5al 0.87 BWI76_RS00785 cystathionine gamma-synthase 0.89 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.91 17
Escherichia coli Nissle 1917 0.87 ECOLIN_RS22725 cystathionine gamma-synthase 0.88 ECOLIN_RS00395 3-isopropylmalate dehydrogenase 0.96 9
Enterobacter asburiae PDN3 0.87 EX28DRAFT_4411 cystathionine gamma-synthase (EC 2.5.1.48) 0.88 EX28DRAFT_3669 3-isopropylmalate dehydrogenase 0.93 7
Escherichia coli BL21 0.87 ECD_03825 cystathionine gamma-synthase, PLP-dependent 0.88 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent 0.95 4
Escherichia coli ECOR38 0.87 HEPCGN_12345 metB cystathionine gamma-synthase 0.88 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.94 28
Escherichia fergusonii Becca 0.87 EFB2_04679 Cystathionine gamma-synthase 0.88 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Escherichia coli ECRC98 0.87 JDDGAC_17300 metB cystathionine gamma-synthase 0.88 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 1.00 2
Escherichia coli ECRC102 0.87 NIAGMN_11430 metB cystathionine gamma-synthase 0.88 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Enterobacter sp. TBS_079 0.87 MPMX20_04531 Cystathionine gamma-synthase 0.88 MPMX20_00768 3-isopropylmalate dehydrogenase 0.94 13
Escherichia coli ECRC100 0.87 OKFHMN_13675 metB cystathionine gamma-synthase 0.88 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.98 29
Escherichia coli ECRC99 0.87 KEDOAH_14485 metB cystathionine gamma-synthase 0.88 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC101 0.87 MCAODC_04175 metB cystathionine gamma-synthase 0.88 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.95 12
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF2323 Cystathionine gamma-synthase (EC 2.5.1.48) 0.88 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Erwinia tracheiphila SCR3 0.85 LU632_RS19640 metB cystathionine gamma-synthase 0.83 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.82 21
Serratia liquefaciens MT49 0.84 IAI46_24540 cystathionine gamma-synthase 0.90 IAI46_03350 3-isopropylmalate dehydrogenase low > 86
Pantoea sp. MT58 0.79 IAI47_00880 cystathionine gamma-synthase 0.83 IAI47_16005 3-isopropylmalate dehydrogenase 0.98 7
Rahnella sp. WP5 0.77 EX31_RS14215 cystathionine gamma-synthase 0.89 EX31_RS03685 3-isopropylmalate dehydrogenase 0.98 6
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_13550 O-succinylhomoserine (thiol)-lyase 0.78 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Shewanella amazonensis SB2B 0.61 Sama_3171 cystathionine gamma-synthase (RefSeq) 0.68 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.98 9
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_2459 cystathionine gamma-synthase (EC 2.5.1.48) 0.50 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 40
Shewanella loihica PV-4 0.60 Shew_0520 O-succinylhomoserine (thiol)-lyase (RefSeq) 0.69 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.97 21
Shewanella sp. ANA-3 0.59 Shewana3_3614 cystathionine gamma-synthase (RefSeq) 0.70 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.95 9
Lysobacter sp. OAE881 0.58 ABIE51_RS16185 O-succinylhomoserine (thiol)-lyase 0.42 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.97 18
Shewanella oneidensis MR-1 0.58 SO4056 metB cystathionine gamma-synthase (NCBI ptt file) 0.69 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.98 5
Rhodanobacter denitrificans MT42 0.57 LRK55_RS05085 cystathionine gamma-synthase 0.39 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Brevundimonas sp. GW460-12-10-14-LB2 0.57 A4249_RS16160 cystathionine gamma-synthase 0.42 A4249_RS09995 3-isopropylmalate dehydrogenase 0.99 7
Rhodanobacter denitrificans FW104-10B01 0.56 LRK54_RS05305 cystathionine gamma-synthase 0.39 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.68 16
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS19030 cystathionine gamma-synthase 0.37 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.96 16
Xanthomonas campestris pv. campestris strain 8004 0.55 Xcc-8004.1596.1 hypothetical protein 0.47 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 74
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_01515 metB cystathionine gamma-synthase 0.39 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Sinorhizobium meliloti 1021 0.50 SMc02595 cystathionine gamma-synthase 0.43 SMc04405 3-isopropylmalate dehydrogenase low > 103
Acinetobacter radioresistens SK82 0.34 MPMX26_01645 O-succinylhomoserine sulfhydrylase 0.50 MPMX26_00348 3-isopropylmalate dehydrogenase 0.90 15
Variovorax sp. OAS795 0.30 ABID97_RS21630 O-succinylhomoserine sulfhydrylase 0.49 ABID97_RS08455 3-isopropylmalate dehydrogenase — —
Dinoroseobacter shibae DFL-12 0.30 Dshi_1002 Cystathionine gamma-synthase (RefSeq) 0.44 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) — —

Not shown: 0 genomes with orthologs for HER17_RS00910 only; 61 genomes with orthologs for HER17_RS03080 only