Conservation of cofitness between HER17_RS00910 and HER17_RS03070 in Pectobacterium carotovorum WPP14

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS00910 cystathionine gamma-synthase 1.0 HER17_RS03070 3-isopropylmalate dehydratase small subunit 0.98 12
Dickeya dianthicola 67-19 0.92 HGI48_RS20425 cystathionine gamma-synthase 0.87 HGI48_RS18070 3-isopropylmalate dehydratase small subunit low > 71
Dickeya dadantii 3937 0.92 DDA3937_RS00950 cystathionine gamma-synthase 0.89 DDA3937_RS18130 3-isopropylmalate dehydratase small subunit 0.74 71
Dickeya dianthicola ME23 0.92 DZA65_RS21470 cystathionine gamma-synthase 0.88 DZA65_RS19215 3-isopropylmalate dehydratase small subunit 0.88 19
Escherichia coli HS(pFamp)R (ATCC 700891) 0.87 OHPLBJKB_04111 Cystathionine gamma-synthase 0.82 OHPLBJKB_03586 3-isopropylmalate dehydratase small subunit low > 73
Klebsiella michiganensis M5al 0.87 BWI76_RS00785 cystathionine gamma-synthase 0.84 BWI76_RS04665 3-isopropylmalate dehydratase small subunit 0.94 1
Escherichia coli ECOR27 0.87 NOLOHH_05820 metB cystathionine gamma-synthase 0.82 NOLOHH_03075 leuD 3-isopropylmalate dehydratase small subunit 0.95 12
Escherichia coli ECRC62 0.87 BNILDI_05715 metB cystathionine gamma-synthase 0.82 BNILDI_08535 leuD 3-isopropylmalate dehydratase small subunit 0.95 44
Escherichia coli BW25113 0.87 b3939 metB cystathionine gamma-synthase (NCBI) 0.82 b0071 leuD isopropylmalate isomerase small subunit (NCBI) 0.90 16
Enterobacter asburiae PDN3 0.87 EX28DRAFT_4411 cystathionine gamma-synthase (EC 2.5.1.48) 0.83 EX28DRAFT_3667 3-isopropylmalate dehydratase, small subunit 0.85 18
Escherichia coli Nissle 1917 0.87 ECOLIN_RS22725 cystathionine gamma-synthase 0.82 ECOLIN_RS00385 3-isopropylmalate dehydratase small subunit 0.90 20
Escherichia coli BL21 0.87 ECD_03825 cystathionine gamma-synthase, PLP-dependent 0.82 ECD_00073 3-isopropylmalate dehydratase small subunit 0.92 15
Escherichia coli ECOR38 0.87 HEPCGN_12345 metB cystathionine gamma-synthase 0.82 HEPCGN_08710 leuD 3-isopropylmalate dehydratase small subunit 0.86 61
Escherichia fergusonii Becca 0.87 EFB2_04679 Cystathionine gamma-synthase 0.82 EFB2_03974 3-isopropylmalate dehydratase small subunit low > 86
Escherichia coli ECRC101 0.87 MCAODC_04175 metB cystathionine gamma-synthase 0.81 MCAODC_01245 leuD 3-isopropylmalate dehydratase small subunit 0.95 11
Escherichia coli ECRC102 0.87 NIAGMN_11430 metB cystathionine gamma-synthase 0.81 NIAGMN_08580 leuD 3-isopropylmalate dehydratase small subunit — —
Escherichia coli ECRC100 0.87 OKFHMN_13675 metB cystathionine gamma-synthase 0.81 OKFHMN_10730 leuD 3-isopropylmalate dehydratase small subunit 0.93 51
Escherichia coli ECRC99 0.87 KEDOAH_14485 metB cystathionine gamma-synthase 0.81 KEDOAH_17425 leuD 3-isopropylmalate dehydratase small subunit — —
Escherichia coli ECRC98 0.87 JDDGAC_17300 metB cystathionine gamma-synthase 0.81 JDDGAC_14325 leuD 3-isopropylmalate dehydratase small subunit 0.96 16
Enterobacter sp. TBS_079 0.87 MPMX20_04531 Cystathionine gamma-synthase 0.82 MPMX20_00766 3-isopropylmalate dehydratase small subunit 1 0.93 20
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF2323 Cystathionine gamma-synthase (EC 2.5.1.48) 0.83 GFF167 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 78
Erwinia tracheiphila SCR3 0.85 LU632_RS19640 metB cystathionine gamma-synthase 0.73 LU632_RS02865 leuD 3-isopropylmalate dehydratase small subunit 0.79 29
Serratia liquefaciens MT49 0.84 IAI46_24540 cystathionine gamma-synthase 0.89 IAI46_03340 3-isopropylmalate dehydratase small subunit low > 86
Pantoea sp. MT58 0.79 IAI47_00880 cystathionine gamma-synthase 0.85 IAI47_16015 3-isopropylmalate dehydratase small subunit 0.97 19
Rahnella sp. WP5 0.77 EX31_RS14215 cystathionine gamma-synthase 0.87 EX31_RS03695 3-isopropylmalate dehydratase small subunit 0.98 17
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_13550 O-succinylhomoserine (thiol)-lyase 0.78 CSW01_12610 3-isopropylmalate dehydratase small subunit low > 62
Shewanella amazonensis SB2B 0.61 Sama_3171 cystathionine gamma-synthase (RefSeq) 0.64 Sama_0338 leuD isopropylmalate isomerase small subunit (RefSeq) 0.98 10
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_2459 cystathionine gamma-synthase (EC 2.5.1.48) 0.58 B158DRAFT_1320 3-isopropylmalate dehydratase, small subunit low > 40
Shewanella loihica PV-4 0.60 Shew_0520 O-succinylhomoserine (thiol)-lyase (RefSeq) 0.64 Shew_3469 isopropylmalate isomerase small subunit (RefSeq) 0.96 28
Shewanella sp. ANA-3 0.59 Shewana3_3614 cystathionine gamma-synthase (RefSeq) 0.62 Shewana3_3758 leuD isopropylmalate isomerase small subunit (RefSeq) 0.95 8
Shewanella oneidensis MR-1 0.58 SO4056 metB cystathionine gamma-synthase (NCBI ptt file) 0.64 SO4233 leuD 3-isopropylmalate dehydratase, small subunit (NCBI ptt file) 0.96 18
Lysobacter sp. OAE881 0.58 ABIE51_RS16185 O-succinylhomoserine (thiol)-lyase 0.39 ABIE51_RS17580 3-isopropylmalate dehydratase small subunit 0.88 57
Rhodanobacter denitrificans MT42 0.57 LRK55_RS05085 cystathionine gamma-synthase 0.42 LRK55_RS07100 3-isopropylmalate dehydratase small subunit low > 63
Brevundimonas sp. GW460-12-10-14-LB2 0.57 A4249_RS16160 cystathionine gamma-synthase 0.38 A4249_RS10000 3-isopropylmalate dehydratase small subunit 0.99 23
Rhodanobacter denitrificans FW104-10B01 0.56 LRK54_RS05305 cystathionine gamma-synthase 0.42 LRK54_RS07370 3-isopropylmalate dehydratase small subunit low > 59
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS19030 cystathionine gamma-synthase 0.40 ABZR86_RS15955 3-isopropylmalate dehydratase small subunit 0.96 5
Xanthomonas campestris pv. campestris strain 8004 0.55 Xcc-8004.1596.1 hypothetical protein 0.60 Xcc-8004.1050.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 74
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_01515 metB cystathionine gamma-synthase 0.40 OKGIIK_13590 leuD 3-isopropylmalate dehydratase small subunit low > 52
Sinorhizobium meliloti 1021 0.50 SMc02595 cystathionine gamma-synthase 0.50 SMc03795 isopropylmalate isomerase small subunit low > 103
Acinetobacter radioresistens SK82 0.34 MPMX26_01645 O-succinylhomoserine sulfhydrylase 0.55 MPMX26_00346 3-isopropylmalate dehydratase small subunit 1 0.90 14
Variovorax sp. OAS795 0.30 ABID97_RS21630 O-succinylhomoserine sulfhydrylase 0.59 ABID97_RS08460 3-isopropylmalate dehydratase small subunit — —
Dinoroseobacter shibae DFL-12 0.30 Dshi_1002 Cystathionine gamma-synthase (RefSeq) 0.51 Dshi_0083 3-isopropylmalate dehydratase, small subunit (RefSeq) low > 64

Not shown: 0 genomes with orthologs for HER17_RS00910 only; 57 genomes with orthologs for HER17_RS03070 only