Conservation of cofitness between HER17_RS11350 and HER17_RS00965 in Pectobacterium carotovorum WPP14

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS11350 23S rRNA (guanine(745)-N(1))-methyltransferase 1.0 HER17_RS00965 HTH-type transcriptional repressor FabR 0.72 12
Dickeya dadantii 3937 0.64 DDA3937_RS11305 23S rRNA (guanine(745)-N(1))-methyltransferase 0.93 DDA3937_RS00980 HTH-type transcriptional repressor FabR low > 74
Dickeya dianthicola 67-19 0.64 HGI48_RS11340 23S rRNA (guanine(745)-N(1))-methyltransferase 0.93 HGI48_RS20395 HTH-type transcriptional repressor FabR low > 71
Dickeya dianthicola ME23 0.63 DZA65_RS11685 23S rRNA (guanine(745)-N(1))-methyltransferase 0.93 DZA65_RS21440 HTH-type transcriptional repressor FabR low > 75
Serratia liquefaciens MT49 0.61 IAI46_14835 23S rRNA (guanine(745)-N(1))-methyltransferase 0.91 IAI46_24465 HTH-type transcriptional repressor FabR low > 86
Rahnella sp. WP5 0.61 EX31_RS24675 23S rRNA (guanine(745)-N(1))-methyltransferase 0.90 EX31_RS14160 HTH-type transcriptional repressor FabR low > 89
Enterobacter sp. TBS_079 0.60 MPMX20_02727 23S rRNA (guanine(745)-N(1))-methyltransferase 0.92 MPMX20_04517 HTH-type transcriptional repressor FabR low > 85
Enterobacter asburiae PDN3 0.59 EX28DRAFT_0737 Methyltransferase domain 0.92 EX28DRAFT_4426 transcriptional regulator, TetR family low > 76
Klebsiella michiganensis M5al 0.58 BWI76_RS17920 23S rRNA (guanine(745)-N(1))-methyltransferase 0.91 BWI76_RS00875 DNA-binding transcriptional regulator FabR low > 92
Escherichia coli BW25113 0.57 b1822 rrmA 23S rRNA m1G745 methyltransferase (NCBI) 0.92 b3963 fabR DNA-binding transcriptional repressor (RefSeq) low > 76
Escherichia fergusonii Becca 0.57 EFB2_02178 23S rRNA (guanine(745)-N(1))-methyltransferase 0.92 EFB2_04647 HTH-type transcriptional repressor FabR low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_01908 23S rRNA (guanine(745)-N(1))-methyltransferase 0.92 OHPLBJKB_04087 HTH-type transcriptional repressor FabR low > 73
Escherichia coli Nissle 1917 0.57 ECOLIN_RS10140 23S rRNA (guanine(745)-N(1))-methyltransferase 0.92 ECOLIN_RS22890 HTH-type transcriptional repressor FabR
Escherichia coli ECRC62 0.57 BNILDI_15805 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.92 BNILDI_05835 fabR HTH-type transcriptional repressor FabR low > 75
Escherichia coli ECOR38 0.57 HEPCGN_04900 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.92 HEPCGN_12200 fabR HTH-type transcriptional repressor FabR low > 87
Escherichia coli BL21 0.57 ECD_01792 23S rRNA m(1)G745 methyltransferase, SAM-dependent 0.92 ECD_03848 transcriptional repressor of fabA and fabB low > 61
Escherichia coli ECRC99 0.56 KEDOAH_01605 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.92 KEDOAH_14615 fabR HTH-type transcriptional repressor FabR
Escherichia coli ECRC98 0.56 JDDGAC_01075 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.92 JDDGAC_17170 fabR HTH-type transcriptional repressor FabR low > 86
Escherichia coli ECRC101 0.56 MCAODC_18905 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.92 MCAODC_04045 fabR HTH-type transcriptional repressor FabR low > 87
Escherichia coli ECRC100 0.56 OKFHMN_26500 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.92 OKFHMN_13545 fabR HTH-type transcriptional repressor FabR low > 80
Escherichia coli ECRC102 0.56 NIAGMN_01560 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.92 NIAGMN_11295 fabR HTH-type transcriptional repressor FabR
Escherichia coli ECOR27 0.56 NOLOHH_17025 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.92 NOLOHH_05690 fabR HTH-type transcriptional repressor FabR low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2836 Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51) 0.91 GFF2349 Unsaturated fatty acid biosythesis repressor FabR, TetR family low > 78
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_10000 23S rRNA (guanine(745)-N(1))-methyltransferase 0.71 CSW01_00775 HTH-type transcriptional repressor FabR low > 62
Pantoea sp. MT58 0.53 IAI47_08750 23S rRNA (guanine(745)-N(1))-methyltransferase 0.90 IAI47_00940 HTH-type transcriptional repressor FabR low > 76
Erwinia tracheiphila SCR3 0.52 LU632_RS13200 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase 0.90 LU632_RS19580 fabR HTH-type transcriptional repressor FabR low > 74
Shewanella sp. ANA-3 0.43 Shewana3_2570 rrmA 23S rRNA methyltransferase A (RefSeq) 0.65 Shewana3_0178 DNA-binding transcriptional repressor FabR (RefSeq) low > 73
Shewanella oneidensis MR-1 0.42 SO2788 rrmA ribosomal RNA large subunit methyltransferase A (NCBI ptt file) 0.65 SO0198 transcriptional regulator, TetR family (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.41 Shew_1613 rrmA 23S rRNA methyltransferase A (RefSeq) 0.65 Shew_0137 DNA-binding transcriptional repressor FabR (RefSeq) low > 60
Shewanella amazonensis SB2B 0.39 Sama_1971 rrmA 23S rRNA methyltransferase A (RefSeq) 0.65 Sama_0192 DNA-binding transcriptional repressor FabR (RefSeq) low > 62
Acinetobacter radioresistens SK82 0.35 MPMX26_02818 23S rRNA (guanine(745)-N(1))-methyltransferase 0.35 MPMX26_01029 HTH-type transcriptional repressor FabR low > 36
Alteromonas macleodii MIT1002 0.33 MIT1002_01980 23S rRNA (guanine(745)-N(1))-methyltransferase 0.55 MIT1002_03371 HTH-type transcriptional repressor FabR low > 70
Pseudomonas putida KT2440 0.31 PP_1524 23S rRNA m1G745 methyltransferase 0.27 PP_4859 Transcriptional regulator, TetR family low > 96
Pseudomonas sp. S08-1 0.31 OH686_06565 23S rRNA (guanine(745)-N(1))-methyltransferase 0.31 OH686_16690 Transcriptional regulator, AcrR family low > 80
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_4722 Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51) 0.28 PfGW456L13_110 Unsaturated fatty acid biosythesis repressor FabR, TetR family low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_1330 23S rRNA m(1)G-745 methyltransferase 0.29 Psyr_4450 transcriptional regulator, TetR family low > 86
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_16405 SAM-dependent methyltransferase 0.27 AO353_13415 TetR family transcriptional regulator low > 101
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_1330 23S rRNA m(1)G-745 methyltransferase 0.29 Psyr_4450 transcriptional regulator, TetR family 0.36 54
Pseudomonas sp. RS175 0.29 PFR28_00385 23S rRNA (guanine(745)-N(1))-methyltransferase 0.27 PFR28_05164 HTH-type transcriptional repressor FabR low > 88
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_3070 Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51) 0.28 Pf1N1B4_1370 Unsaturated fatty acid biosythesis repressor FabR, TetR family low > 87
Pseudomonas simiae WCS417 0.29 PS417_06150 SAM-dependent methlyltransferase 0.27 PS417_02720 TetR family transcriptional regulator low > 88
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_3084 Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51) 0.27 Pf6N2E2_3568 Unsaturated fatty acid biosythesis repressor FabR, TetR family low > 103
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_06095 SAM-dependent methyltransferase 0.27 AO356_08445 TetR family transcriptional regulator low > 104
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS06215 methyltransferase domain-containing protein 0.26 PFLU_RS02790 TetR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.28 PFLU_RS06215 methyltransferase domain-containing protein 0.26 PFLU_RS02790 TetR family transcriptional regulator low > 109
Marinobacter adhaerens HP15 0.27 HP15_1754 rRNA (guanine-N1-)-methyltransferase A, predicted 0.56 HP15_2045 DNA-binding transcriptional repressor FabR low > 73

Not shown: 1 genomes with orthologs for HER17_RS11350 only; 5 genomes with orthologs for HER17_RS00965 only