| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF3239 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | 1.0 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | 0.65 | 3 |
| Escherichia coli ECOR38 | 0.92 | HEPCGN_23240 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.99 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | low | > 87 |
| Escherichia coli BW25113 | 0.92 | b0948 | ycbY | predicted methyltransferase (NCBI) | 0.99 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.92 | ECD_00952 | | 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent | 0.99 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.92 | OHPLBJKB_02718 | | Ribosomal RNA large subunit methyltransferase K/L | 0.99 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | low | > 73 |
| Escherichia coli ECRC101 | 0.92 | MCAODC_24670 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.99 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | 0.55 | 32 |
| Escherichia coli ECRC99 | 0.92 | KEDOAH_22455 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.99 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC102 | 0.92 | NIAGMN_03000 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.99 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC100 | 0.92 | OKFHMN_05280 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.99 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | low | > 80 |
| Escherichia coli ECRC62 | 0.92 | BNILDI_20000 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.99 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | low | > 75 |
| Escherichia coli ECOR27 | 0.92 | NOLOHH_21835 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.99 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | low | > 75 |
| Escherichia coli Nissle 1917 | 0.92 | ECOLIN_RS04980 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.99 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC98 | 0.92 | JDDGAC_08890 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.99 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | low | > 86 |
| Escherichia fergusonii Becca | 0.92 | EFB2_03123 | | Ribosomal RNA large subunit methyltransferase K/L | 0.99 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | low | > 86 |
| Enterobacter sp. TBS_079 | 0.88 | MPMX20_01599 | | Ribosomal RNA large subunit methyltransferase K/L | 1.00 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | low | > 85 |
| Enterobacter asburiae PDN3 | 0.88 | EX28DRAFT_1995 | | Predicted N6-adenine-specific DNA methylase | 1.00 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | — | — |
| Klebsiella michiganensis M5al | 0.87 | BWI76_RS09925 | | 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase | 0.98 | BWI76_RS05015 | | transcriptional regulator | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.78 | HER17_RS11990 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.95 | HER17_RS05580 | | RNA polymerase-binding protein DksA | low | > 75 |
| Serratia liquefaciens MT49 | 0.78 | IAI46_08820 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.97 | IAI46_21210 | | RNA polymerase-binding protein DksA | low | > 86 |
| Dickeya dadantii 3937 | 0.77 | DDA3937_RS12840 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.97 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | — | — |
| Rahnella sp. WP5 | 0.77 | EX31_RS18080 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.97 | EX31_RS03250 | | RNA polymerase-binding protein DksA | low | > 89 |
| Dickeya dianthicola 67-19 | 0.77 | HGI48_RS12910 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.97 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | low | > 71 |
| Dickeya dianthicola ME23 | 0.77 | DZA65_RS13375 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.97 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | — | — |
| Pantoea sp. MT58 | 0.76 | IAI47_12690 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.96 | IAI47_15635 | | RNA polymerase-binding protein DksA | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.76 | LU632_RS09965 | rlmKL | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.97 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.58 | CSW01_07480 | | ribosomal RNA large subunit methyltransferase K/L | 0.84 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | low | > 62 |
| Shewanella amazonensis SB2B | 0.50 | Sama_1600 | rlmL | 23S rRNA m(2)G2445 methyltransferase (RefSeq) | 0.84 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.48 | Shew_1812 | | 23S rRNA m(2)G2445 methyltransferase (RefSeq) | 0.85 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.48 | SO1851 | | conserved hypothetical protein (NCBI ptt file) | 0.83 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_1601 | rlmL | 23S rRNA m(2)G2445 methyltransferase (RefSeq) | 0.83 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_02036 | | Ribosomal RNA large subunit methyltransferase K/L | 0.73 | MIT1002_03690 | | DnaK suppressor protein | low | > 70 |
| Pseudomonas stutzeri RCH2 | 0.43 | Psest_1949 | | Predicted N6-adenine-specific DNA methylase | 0.66 | Psest_1003 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas putida KT2440 | 0.43 | PP_2096 | | fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase | 0.63 | PP_4693 | | RNA polymerase-binding transcription factor DksA | low | > 96 |
| Pseudomonas sp. S08-1 | 0.43 | OH686_03110 | | 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase | 0.67 | OH686_17280 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas simiae WCS417 | 0.41 | PS417_20930 | | 50S rRNA methyltransferase | 0.67 | PS417_23875 | | molecular chaperone DnaK | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS22545 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.66 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS22545 | | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | 0.66 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_2108 | | 23S rRNA m(2)G-2445 methyltransferase | 0.66 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_2108 | | 23S rRNA m(2)G-2445 methyltransferase | 0.66 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.41 | Pf1N1B4_3844 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | 0.67 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_4094 | | 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) | 0.67 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | low | > 87 |
| Pseudomonas sp. RS175 | 0.41 | PFR28_01055 | | Ribosomal RNA large subunit methyltransferase K/L | 0.68 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_00775 | | 50S rRNA methyltransferase | 0.68 | AO353_14420 | | molecular chaperone DnaK | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_02605 | | 50S rRNA methyltransferase | 0.67 | AO356_16095 | | molecular chaperone DnaK | low | > 104 |
| Marinobacter adhaerens HP15 | 0.40 | HP15_1379 | | RNA methylase | 0.60 | HP15_332 | | transcriptional regulator, TraR/DksA family | — | — |
| Kangiella aquimarina DSM 16071 | 0.40 | B158DRAFT_2229 | | 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) | 0.72 | B158DRAFT_0056 | | transcriptional regulator, TraR/DksA family | low | > 40 |
| Acinetobacter radioresistens SK82 | 0.38 | MPMX26_01097 | | Ribosomal RNA large subunit methyltransferase K/L | 0.64 | MPMX26_00177 | | RNA polymerase-binding transcription factor DksA | low | > 36 |
Not shown: 7 genomes with orthologs for GFF3239 only; 16 genomes with orthologs for GFF87 only