Conservation of cofitness between GFF3953 and GFF747 in Sphingobium sp. HT1-2

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF3953 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) 1.0 GFF747 DNA recombination protein RmuC 0.73 3
Sphingomonas koreensis DSMZ 15582 0.61 Ga0059261_1844 O-6-methylguanine DNA methyltransferase 0.39 Ga0059261_0643 Uncharacterized protein conserved in bacteria low > 68
Pseudomonas simiae WCS417 0.58 PS417_06965 cysteine methyltransferase 0.15 PS417_19970 recombinase RmuC low > 88
Pseudomonas lactucae CFBP13502 0.58 GEMAOFIL_01545 Methylated-DNA--protein-cysteine methyltransferase 0.15 GEMAOFIL_04191 hypothetical protein low > 96
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_2670 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) 0.15 PfGW456L13_4224 DNA recombination protein RmuC low > 87
Pseudomonas fluorescens SBW25 0.58 PFLU_RS07030 methylated-DNA--[protein]-cysteine S-methyltransferase 0.15 PFLU_RS21940 DNA recombination protein RmuC low > 109
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS07030 methylated-DNA--[protein]-cysteine S-methyltransferase 0.15 PFLU_RS21940 DNA recombination protein RmuC low > 109
Pseudomonas sp. RS175 0.58 PFR28_03616 Methylated-DNA--protein-cysteine methyltransferase 0.15 PFR28_03190 hypothetical protein low > 88
Pseudomonas putida KT2440 0.57 PP_3017 O6-methylguanine-DNA methyltransferase 0.15 PP_1694 DNA recombination limiting inversions protein low > 96
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_06890 cysteine methyltransferase 0.16 AO356_19220 recombinase RmuC low > 104
Pantoea sp. MT58 0.57 IAI47_13640 methylated-DNA--[protein]-cysteine S-methyltransferase 0.13 IAI47_18290 DNA recombination protein RmuC low > 76
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_4080 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) 0.16 Pf1N1B4_3724 DNA recombination protein RmuC — —
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_3240 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) 0.15 Pf6N2E2_5759 DNA recombination protein RmuC low > 103
Pantoea agglomerans CFBP13505 P0401 0.56 PagCFBP13505_RS03660 methylated-DNA--[protein]-cysteine S-methyltransferase 0.13 PagCFBP13505_RS15270 DNA recombination protein RmuC low > 74
Erwinia tracheiphila HP pepo 2.2 0.56 IJEDHG_02050 glycosyltransferase 0.13 IJEDHG_08655 DNA recombination protein RmuC low > 61
Erwinia tracheiphila SCR3 0.56 LU632_RS15965 methylated-DNA--[protein]-cysteine S-methyltransferase 0.13 LU632_RS24010 rmuC DNA recombination protein RmuC low > 73
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_15075 cysteine methyltransferase 0.16 AO353_02560 recombinase RmuC low > 101
Pseudomonas aeruginosa MRSN321 0.52 DY961_RS07505 methylated-DNA--[protein]-cysteine S-methyltransferase 0.16 DY961_RS07305 rmuC;inference=COORDINATES DNA recombination protein RmuC low > 100
Pseudomonas aeruginosa PA14 0.52 IKLFDK_04510 methylated-DNA--[protein]-cysteine S-methyltransferase 0.16 IKLFDK_04710 DNA recombination RmuC-like protein low > 98
Pseudomonas aeruginosa PUPa3 0.52 DQ20_RS45285 methylated-DNA--[protein]-cysteine S-methyltransferase 0.16 DQ20_RS45480 rmuC;inference=COORDINATES DNA recombination protein RmuC low > 101
Erwinia amylovora T8 0.52 OLJFJH_16870 glycosyltransferase 0.13 OLJFJH_06495 DNA recombination protein RmuC low > 58
Rahnella sp. WP5 0.50 EX31_RS08260 methylated-DNA--[protein]-cysteine S-methyltransferase 0.15 EX31_RS14630 DNA recombination protein RmuC low > 89
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS17080 methylated-DNA--[protein]-cysteine S-methyltransferase 0.06 QEN71_RS04465 DNA recombination protein RmuC low > 153
Rhodanobacter denitrificans MT42 0.43 LRK55_RS16040 methylated-DNA--[protein]-cysteine S-methyltransferase 0.14 LRK55_RS06675 DNA recombination protein RmuC low > 63
Lysobacter sp. OAE881 0.43 ABIE51_RS06260 methylated-DNA--[protein]-cysteine S-methyltransferase 0.13 ABIE51_RS00985 DNA recombination protein RmuC low > 62
Rhodanobacter sp000427505 FW510-R12 0.43 LRK53_RS12525 methylated-DNA--[protein]-cysteine S-methyltransferase 0.14 LRK53_RS01460 DNA recombination protein RmuC low > 59
Shewanella oneidensis MR-1 0.39 SO3126 ogt methylated-DNA--protein-cysteine methyltransferase (NCBI ptt file) 0.13 SO2041 conserved hypothetical protein (NCBI ptt file) low > 76
Pedobacter sp. GW460-11-11-14-LB5 0.36 CA265_RS03455 cysteine methyltransferase 0.16 CA265_RS21160 DNA recombination protein RmuC low > 88
Bacteroides stercoris CC31F 0.36 HMPREF1181_RS08760 methylated-DNA--[protein]-cysteine S-methyltransferase 0.13 HMPREF1181_RS16570 DNA recombination protein RmuC low > 56
Klebsiella michiganensis M5al 0.33 BWI76_RS16180 methylated-DNA--protein-cysteine methyltransferase 0.14 BWI76_RS01300 DNA recombination protein RmuC — —
Escherichia fergusonii Becca 0.33 EFB2_02592 Methylated-DNA--protein-cysteine methyltransferase 0.16 EFB2_04783 hypothetical protein low > 86
Escherichia coli ECRC101 0.33 MCAODC_16035 ogt methylated-DNA--[protein]-cysteine S-methyltransferase 0.16 MCAODC_04815 rmuC DNA recombination protein RmuC low > 87
Escherichia coli ECRC102 0.33 NIAGMN_26405 ogt methylated-DNA--[protein]-cysteine S-methyltransferase 0.16 NIAGMN_12065 rmuC DNA recombination protein RmuC low > 80
Escherichia coli ECRC99 0.33 KEDOAH_26535 ogt methylated-DNA--[protein]-cysteine S-methyltransferase 0.16 KEDOAH_13840 rmuC DNA recombination protein RmuC — —
Pectobacterium carotovorum WPP14 0.33 HER17_RS10530 methylated-DNA--[protein]-cysteine S-methyltransferase 0.13 HER17_RS20615 DNA recombination protein RmuC low > 75
Escherichia coli ECOR27 0.33 NOLOHH_19935 ogt methylated-DNA--[protein]-cysteine S-methyltransferase 0.16 NOLOHH_06440 rmuC DNA recombination protein RmuC — —
Escherichia coli ECRC100 0.33 OKFHMN_02235 ogt methylated-DNA--[protein]-cysteine S-methyltransferase 0.16 OKFHMN_14310 rmuC DNA recombination protein RmuC — —
Escherichia coli ECRC98 0.33 JDDGAC_04780 ogt methylated-DNA--[protein]-cysteine S-methyltransferase 0.16 JDDGAC_17935 rmuC DNA recombination protein RmuC low > 87
Escherichia coli BW25113 0.32 b1335 ogt O-6-alkylguanine-DNA:cysteine-protein methyltransferase (NCBI) 0.16 b3832 rmuC predicted recombination limiting protein (NCBI) low > 76
Escherichia coli ECOR38 0.32 HEPCGN_25930 ogt methylated-DNA--[protein]-cysteine S-methyltransferase 0.16 HEPCGN_12940 rmuC DNA recombination protein RmuC low > 88
Escherichia coli Nissle 1917 0.32 ECOLIN_RS08010 methylated-DNA--[protein]-cysteine S-methyltransferase 0.16 ECOLIN_RS22110 DNA recombination protein RmuC — —
Escherichia coli ECRC62 0.32 BNILDI_18085 ogt methylated-DNA--[protein]-cysteine S-methyltransferase 0.16 BNILDI_05090 rmuC DNA recombination protein RmuC low > 75
Escherichia coli BL21 0.32 ECD_01312 O-6-alkylguanine-DNA:cysteine-protein methyltransferase 0.16 ECD_03725 DNA recombination protein low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_02347 Methylated-DNA--protein-cysteine methyltransferase 0.16 OHPLBJKB_04219 hypothetical protein low > 74
Azospirillum sp. SherDot2 0.32 MPMX19_05810 Methylated-DNA--protein-cysteine methyltransferase 0.29 MPMX19_01967 hypothetical protein low > 112
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF2655 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) 0.14 GFF259 DNA recombination protein RmuC low > 78
Bifidobacterium breve UCC2003 0.24 BBR_RS12185 methylated-DNA--[protein]-cysteine S-methyltransferase 0.20 BBR_RS11670 DNA recombination protein RmuC low > 34

Not shown: 45 genomes with orthologs for GFF3953 only; 10 genomes with orthologs for GFF747 only