Conservation of cofitness between GFF2061 and GFF675 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2061 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup 1.0 GFF675 Excinuclease ABC subunit B 0.54 20
Escherichia coli ECRC62 0.96 BNILDI_12665 yfeX porphyrinogen peroxidase 0.95 BNILDI_21020 uvrB excinuclease ABC subunit UvrB low > 75
Escherichia coli ECOR27 0.96 NOLOHH_13800 yfeX porphyrinogen peroxidase 0.95 NOLOHH_22750 uvrB excinuclease ABC subunit UvrB low > 75
Escherichia coli ECOR38 0.96 HEPCGN_21295 yfeX porphyrinogen peroxidase 0.95 HEPCGN_01660 uvrB excinuclease ABC subunit UvrB low > 87
Escherichia fergusonii Becca 0.96 EFB2_01448 Dye-decolorizing peroxidase YfeX 0.95 EFB2_03326 UvrABC system protein B low > 86
Escherichia coli BL21 0.96 ECD_02331 porphyrinogen oxidase, cytoplasmic 0.95 ECD_00746 exision nuclease of nucleotide excision repair, DNA damage recognition component 0.74 2
Escherichia coli ECRC98 0.96 JDDGAC_26070 yfeX porphyrinogen peroxidase 0.95 JDDGAC_10015 uvrB excinuclease ABC subunit UvrB low > 86
Escherichia coli BW25113 0.96 b2431 b2431 orf, hypothetical protein (VIMSS) 0.95 b0779 uvrB excinuclease ABC subunit B (NCBI) low > 76
Escherichia coli Nissle 1917 0.96 ECOLIN_RS13940 porphyrinogen peroxidase 0.95 ECOLIN_RS04150 excinuclease ABC subunit UvrB low > 55
Escherichia coli ECRC100 0.96 OKFHMN_22120 yfeX porphyrinogen peroxidase 0.95 OKFHMN_06380 uvrB excinuclease ABC subunit UvrB low > 80
Escherichia coli ECRC99 0.96 KEDOAH_06100 yfeX porphyrinogen peroxidase 0.95 KEDOAH_21530 uvrB excinuclease ABC subunit UvrB
Escherichia coli ECRC101 0.96 MCAODC_12650 yfeX porphyrinogen peroxidase 0.95 MCAODC_25595 uvrB excinuclease ABC subunit UvrB low > 87
Escherichia coli ECRC102 0.96 NIAGMN_19890 yfeX porphyrinogen peroxidase 0.95 NIAGMN_04425 uvrB excinuclease ABC subunit UvrB
Escherichia coli HS(pFamp)R (ATCC 700891) 0.96 OHPLBJKB_01291 putative deferrochelatase/peroxidase YfeX 0.95 OHPLBJKB_02934 UvrABC system protein B low > 73
Enterobacter sp. TBS_079 0.95 MPMX20_03318 Dye-decolorizing peroxidase YfeX 0.95 MPMX20_01408 UvrABC system protein B low > 85
Enterobacter asburiae PDN3 0.94 EX28DRAFT_0204 Dyp-type peroxidase family 0.94 EX28DRAFT_2211 Excinuclease ABC subunit B low > 76
Klebsiella michiganensis M5al 0.90 BWI76_RS20710 dyp-type peroxidase family protein 0.94 BWI76_RS08785 excinuclease ABC subunit B low > 92
Rahnella sp. WP5 0.71 EX31_RS20230 Dyp-type peroxidase 0.88 EX31_RS23720 excinuclease ABC subunit B 0.37 3
Dickeya dadantii 3937 0.70 DDA3937_RS04420 Dyp-type peroxidase 0.87 DDA3937_RS08530 excinuclease ABC subunit B low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS04395 Dyp-type peroxidase 0.87 HGI48_RS08695 excinuclease ABC subunit B low > 71
Dickeya dianthicola ME23 0.69 DZA65_RS04310 Dyp-type peroxidase 0.87 DZA65_RS08990 excinuclease ABC subunit B low > 75
Serratia liquefaciens MT49 0.69 IAI46_18515 Dyp-type peroxidase 0.88 IAI46_06550 excinuclease ABC subunit B low > 86
Pectobacterium carotovorum WPP14 0.68 HER17_RS17230 Dyp-type peroxidase 0.89 HER17_RS13420 excinuclease ABC subunit B low > 75
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_10710 deferrochelatase 0.77 CSW01_05185 excinuclease ABC subunit UvrB low > 62
Magnetospirillum magneticum AMB-1 0.34 AMB_RS03620 iron-dependent peroxidase 0.61 AMB_RS19255 excinuclease ABC subunit UvrB low > 64
Shewanella oneidensis MR-1 0.31 SO0740 melanin biosynthesis protein TyrA, putative (NCBI ptt file) 0.75 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.31 Sama_0670 melanin biosynthesis protein TyrA, putative (RefSeq) 0.74 Sama_1828 excinuclease ABC subunit B (RefSeq) low > 62
Shewanella sp. ANA-3 0.30 Shewana3_3513 Dyp-type peroxidase family protein (RefSeq) 0.74 Shewana3_2166 excinuclease ABC subunit B (RefSeq) low > 73
Acinetobacter radioresistens SK82 0.30 MPMX26_00092 Dye-decolorizing peroxidase YfeX 0.65 MPMX26_02142 UvrABC system protein B low > 36
Shewanella loihica PV-4 0.30 Shew_0864 Dyp-type peroxidase family protein (RefSeq) 0.73 Shew_2064 excinuclease ABC subunit B (RefSeq)
Mycobacterium tuberculosis H37Rv 0.29 Rv0799c Conserved protein 0.55 Rv1633 Probable excinuclease ABC (subunit B-helicase) UvrB low > 58
Burkholderia phytofirmans PsJN 0.28 BPHYT_RS30665 peroxidase 0.66 BPHYT_RS06905 excinuclease ABC subunit B low > 109
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS01625 Dyp-type peroxidase 0.70 ABZR86_RS09750 excinuclease ABC subunit UvrB low > 74
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_06452 putative iron-dependent peroxidase 0.65 H281DRAFT_04973 Excinuclease ABC subunit B low > 103
Paraburkholderia sabiae LMG 24235 0.27 QEN71_RS09545 Dyp-type peroxidase 0.66 QEN71_RS23870 excinuclease ABC subunit UvrB low > 153
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_3869 Dyp-type peroxidase family 0.59 Ga0059261_3779 Excinuclease ABC subunit B low > 68
Pseudomonas simiae WCS417 0.26 PS417_11115 peroxidase 0.71 PS417_18685 excinuclease ABC subunit B low > 88
Bacteroides ovatus ATCC 8483 0.25 BACOVA_00506 Dyp-type peroxidase family protein 0.51 BACOVA_03714 excinuclease ABC, B subunit low > 94
Bacteroides thetaiotaomicron VPI-5482 0.24 BT1219 conserved hypothetical protein (NCBI ptt file) 0.51 BT0570 excinuclease ABC subunit B (NCBI ptt file) low > 81
Paraburkholderia graminis OAS925 0.24 ABIE53_006344 putative iron-dependent peroxidase 0.65 ABIE53_001645 excinuclease ABC subunit B low > 113
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS13340 Dyp-type peroxidase 0.56 ABZR88_RS18110 excinuclease ABC subunit UvrB low > 71
Alteromonas macleodii MIT1002 0.22 MIT1002_00420 putative deferrochelatase/peroxidase YfeX 0.74 MIT1002_01261 Excinuclease ABC subunit B low > 70
Pseudomonas fluorescens SBW25 0.16 PFLU_RS18740 Dyp-type peroxidase 0.71 PFLU_RS20655 excinuclease ABC subunit B low > 109
Pseudomonas fluorescens SBW25-INTG 0.16 PFLU_RS18740 Dyp-type peroxidase 0.71 PFLU_RS20655 excinuclease ABC subunit B low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.16 GFF4790 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup 0.64 GFF4962 Excinuclease ABC subunit B low > 90

Not shown: 0 genomes with orthologs for GFF2061 only; 54 genomes with orthologs for GFF675 only