Conservation of cofitness between PS417_24580 and PS417_28170 in Pseudomonas simiae WCS417

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_24580 pseudouridine synthase 1.0 PS417_28170 transcriptional regulator 0.19 20
Pseudomonas fluorescens SBW25 0.95 PFLU_RS26510 pseudouridine synthase 0.91 PFLU_RS29855 FMN-binding negative transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS26510 pseudouridine synthase 0.91 PFLU_RS29855 FMN-binding negative transcriptional regulator low > 109
Pseudomonas sp. RS175 0.88 PFR28_03839 Ribosomal large subunit pseudouridine synthase E 0.73 PFR28_04509 Protease synthase and sporulation protein PAI 2 low > 88
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_4336 ribosomal large subunit pseudouridine synthase E 0.67 Psyr_5057 negative transcriptional regulator low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_4336 ribosomal large subunit pseudouridine synthase E 0.67 Psyr_5057 negative transcriptional regulator 0.28 51
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_2722 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) 0.73 Pf1N1B4_2017 Transcriptional regulator low > 87
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_15455 pseudouridine synthase 0.76 AO356_12065 transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_06330 pseudouridine synthase 0.74 AO353_09995 transcriptional regulator low > 101
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_1389 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) 0.75 PfGW456L13_732 Transcriptional regulator low > 87
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_5028 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) 0.74 Pf6N2E2_4287 Transcriptional regulator low > 103
Pseudomonas putida KT2440 0.82 PP_4778 23S rRNA pseudouridine 2457 synthase 0.60 PP_5343 putative Transcriptional regulator low > 96
Pseudomonas sp. S08-1 0.76 OH686_08840 LSU rRNA pseudouridine(2457) synthase 0.61 OH686_13305 FMN-binding negative transcriptional regulator low > 80
Shewanella amazonensis SB2B 0.59 Sama_2060 pseudouridylate synthase (RefSeq) 0.25 Sama_1658 negative transcriptional regulator (RefSeq) low > 62
Azospirillum sp. SherDot2 0.57 MPMX19_00077 Ribosomal large subunit pseudouridine synthase E 0.51 MPMX19_05399 Protease synthase and sporulation protein PAI 2 low > 112
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_1070 pseudouridine synthase 0.40 Ga0059261_1960 negative transcriptional regulator, PaiB family low > 68
Variovorax sp. SCN45 0.56 GFF6670 LSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20) 0.36 GFF4229 Transcriptional regulator low > 127
Acidovorax sp. GW101-3H11 0.55 Ac3H11_10 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) 0.40 Ac3H11_4235 Transcriptional regulator low > 79
Serratia liquefaciens MT49 0.53 IAI46_10455 23S rRNA pseudouridine(2457) synthase RluE 0.37 IAI46_07485 FMN-binding negative transcriptional regulator low > 86
Dickeya dadantii 3937 0.53 DDA3937_RS11475 23S rRNA pseudouridine(2457) synthase RluE 0.38 DDA3937_RS07550 FMN-binding negative transcriptional regulator low > 74
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS09950 pseudouridine synthase 0.36 LRK54_RS02410 FMN-binding negative transcriptional regulator low > 59
Lysobacter sp. OAE881 0.52 ABIE51_RS00615 pseudouridine synthase 0.24 ABIE51_RS12645 FMN-binding negative transcriptional regulator low > 62
Rhodanobacter denitrificans MT42 0.51 LRK55_RS09590 pseudouridine synthase 0.36 LRK55_RS02165 FMN-binding negative transcriptional regulator low > 63
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.351.1 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.20 Xcc-8004.3323.1 transcriptional regulator protein Pai2 low > 74
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS13170 pseudouridine synthase 0.39 ABZR86_RS08725 FMN-binding negative transcriptional regulator low > 74
Rhodanobacter sp. FW510-T8 0.48 OKGIIK_16200 Pseudouridine synthase 0.36 OKGIIK_09475 paiB transcriptional regulator low > 52
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS07010 pseudouridine synthase 0.42 HSERO_RS22615 transcriptional regulator low > 78
Paraburkholderia sabiae LMG 24235 0.48 QEN71_RS02975 pseudouridine synthase 0.39 QEN71_RS17335 FMN-binding negative transcriptional regulator low > 153
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_04086 23S rRNA pseudouridine2457 synthase 0.43 H281DRAFT_04802 negative transcriptional regulator, PaiB family low > 103
Paraburkholderia graminis OAS925 0.47 ABIE53_003318 23S rRNA pseudouridine2457 synthase 0.45 ABIE53_000956 transcriptional regulator low > 113

Not shown: 31 genomes with orthologs for PS417_24580 only; 13 genomes with orthologs for PS417_28170 only