Conservation of cofitness between PS417_04290 and PS417_24335 in Pseudomonas simiae WCS417

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_04290 hypothetical protein 1.0 PS417_24335 50S rRNA methyltransferase 0.40 7
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS04345 ribosome-associated protein 0.92 PFLU_RS26260 class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens SBW25 0.96 PFLU_RS04345 ribosome-associated protein 0.92 PFLU_RS26260 class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_1091 FIG138315: Putative alpha helix protein 0.88 Pf1N1B4_2763 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 87
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_5025 FIG138315: Putative alpha helix protein 0.90 PfGW456L13_1438 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_07090 hypothetical protein 0.86 AO356_15650 50S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_3279 FIG138315: Putative alpha helix protein 0.86 Pf6N2E2_5071 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 103
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_05210 hypothetical protein 0.86 AO353_13950 50S rRNA methyltransferase low > 101
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_4155 Protein of unknown function DUF615 0.80 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_4155 Protein of unknown function DUF615 0.80 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase low > 86
Pseudomonas sp. RS175 0.89 PFR28_00162 hypothetical protein 0.86 PFR28_03798 Ribosomal RNA large subunit methyltransferase G low > 88
Pseudomonas sp. S08-1 0.80 OH686_08575 UPF0307 protein YjgA 0.74 OH686_16135 23S rRNA (guanine(1835)-N(2))-methyltransferase low > 80
Pseudomonas putida KT2440 0.77 PP_0941 putative ribosome associated protein 0.80 PP_4648 Ribosomal RNA large subunit methyltransferase G low > 96
Pseudomonas stutzeri RCH2 0.74 Psest_3319 Uncharacterized protein conserved in bacteria 0.72 Psest_3440 16S RNA G1207 methylase RsmC low > 67
Pectobacterium carotovorum WPP14 0.36 HER17_RS20095 ribosome-associated protein 0.37 HER17_RS18680 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Marinobacter adhaerens HP15 0.35 HP15_2448 protein belonging to uncharacterized protein family UPF0307 0.25 HP15_2265 rRNA (guanine-N2-)-methyltransferase, RsmD low > 73
Serratia liquefaciens MT49 0.34 IAI46_22590 ribosome-associated protein 0.37 IAI46_22185 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Enterobacter asburiae PDN3 0.34 EX28DRAFT_3421 Uncharacterized protein conserved in bacteria 0.35 EX28DRAFT_3153 16S RNA G1207 methylase RsmC — —
Dickeya dadantii 3937 0.34 DDA3937_RS01495 ribosome-associated protein 0.34 DDA3937_RS02850 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 74
Enterobacter sp. TBS_079 0.34 MPMX20_00516 hypothetical protein 0.35 MPMX20_03995 Ribosomal RNA large subunit methyltransferase G — —
Dickeya dianthicola ME23 0.32 DZA65_RS01475 ribosome-associated protein 0.34 DZA65_RS03000 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Pantoea sp. MT58 0.32 IAI47_02760 ribosome-associated protein 0.34 IAI47_02950 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Dickeya dianthicola 67-19 0.32 HGI48_RS01410 ribosome-associated protein 0.33 HGI48_RS02825 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 71
Erwinia tracheiphila SCR3 0.32 LU632_RS02140 ribosome-associated protein 0.33 LU632_RS02335 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 74
Klebsiella michiganensis M5al 0.32 BWI76_RS02845 hypothetical protein 0.34 BWI76_RS24680 23S rRNA (guanine(1835)-N(2))-methyltransferase — —
Escherichia coli ECRC102 0.32 NIAGMN_09780 yjgA ribosome-associated protein 0.36 NIAGMN_16325 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECOR27 0.32 NOLOHH_04190 yjgA ribosome-associated protein 0.36 NOLOHH_10360 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 57
Escherichia coli ECRC101 0.32 MCAODC_02435 yjgA ribosome-associated protein 0.36 MCAODC_09075 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC98 0.32 JDDGAC_15570 yjgA ribosome-associated protein 0.36 JDDGAC_22195 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC101 0.32 OKFHMN_11930 yjgA ribosome-associated protein 0.36 OKFHMN_18560 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli Nissle 1917 0.32 ECOLIN_RS24565 ribosome biogenesis factor YjgA 0.36 ECOLIN_RS17790 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia fergusonii Becca 0.32 EFB2_04299 hypothetical protein 0.36 EFB2_00728 Ribosomal RNA large subunit methyltransferase G low > 86
Escherichia coli ECRC62 0.32 BNILDI_07320 yjgA ribosome-associated protein 0.35 BNILDI_01155 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli BL21 0.32 ECD_04102 ribosome-associated UPF0307 family protein 0.35 ECD_02953 23S rRNA m(2)G1835 methyltransferase, SAM-dependent low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_03801 hypothetical protein 0.35 OHPLBJKB_00618 Ribosomal RNA large subunit methyltransferase G low > 73
Escherichia coli BW25113 0.32 b4234 yjgA hypothetical protein (NCBI) 0.35 b3084 ygjO putative enzyme (VIMSS) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.32 GFF903 FIG138315: Putative alpha helix protein 0.36 GFF3186 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) — —
Escherichia coli ECRC99 0.32 KEDOAH_16225 yjgA ribosome-associated protein 0.36 KEDOAH_09585 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECOR38 0.32 HEPCGN_10130 yjgA ribosome-associated protein 0.35 HEPCGN_17415 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 85
Rahnella sp. WP5 0.31 EX31_RS12315 ribosome-associated protein 0.33 EX31_RS08350 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 89
Shewanella amazonensis SB2B 0.27 Sama_0481 hypothetical protein (RefSeq) 0.33 Sama_2548 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.26 SO4079 conserved hypothetical protein (NCBI ptt file) 0.30 SO1097 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.25 Shewana3_3632 hypothetical protein (RefSeq) 0.31 Shewana3_0932 methyltransferase small (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.24 MIT1002_00229 x96 protein 0.32 MIT1002_00689 Ribosomal RNA large subunit methyltransferase G low > 70
Shewanella loihica PV-4 0.20 Shew_0415 hypothetical protein (RefSeq) 0.30 Shew_2886 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) low > 60

Not shown: 13 genomes with orthologs for PS417_04290 only; 1 genomes with orthologs for PS417_24335 only