Conservation of cofitness between PS417_23250 and PS417_22780 in Pseudomonas simiae WCS417

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase 1.0 PS417_22780 XRE family transcriptional regulator 0.39 11
Pseudomonas fluorescens SBW25 0.99 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 1.00 PFLU_RS24430 response regulator transcription factor low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 1.00 PFLU_RS24430 response regulator transcription factor low > 109
Pseudomonas fluorescens FW300-N1B4 0.94 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.98 Pf1N1B4_724 DNA-binding response regulator ColR low > 87
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.99 AO353_04020 XRE family transcriptional regulator low > 101
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.99 PfGW456L13_1767 DNA-binding response regulator ColR low > 87
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.98 AO356_18415 XRE family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.98 Pf6N2E2_5609 DNA-binding response regulator ColR low > 103
Pseudomonas sp. RS175 0.91 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.98 PFR28_03335 Transcriptional activator protein CzcR low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1227 Queuosine biosynthesis protein 0.98 Psyr_4070 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1227 Queuosine biosynthesis protein 0.98 Psyr_4070 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas putida KT2440 0.89 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.98 PP_0901 DNA-binding response regulator low > 96
Pseudomonas sp. S08-1 0.85 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.89 OH686_17340 DNA-binding response regulator ColR low > 80
Pseudomonas stutzeri RCH2 0.85 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.80 Psest_3465 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 67
Shewanella sp. ANA-3 0.73 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.40 Shewana3_4007 two component transcriptional regulator (RefSeq) low > 73
Shewanella oneidensis MR-1 0.73 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) 0.44 SO4637 DNA-binding response regulator (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.73 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) 0.42 Shew_3317 two component transcriptional regulator (RefSeq) — —
Shewanella amazonensis SB2B 0.72 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.42 Sama_0146 response regulator receiver protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.64 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.40 MIT1002_00641 Transcriptional regulatory protein QseB low > 70
Kangiella aquimarina DSM 16071 0.62 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.55 B158DRAFT_0632 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 40
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.62 Xcc-8004.1335.1 Two-component system regulatory protein — —
Rhodanobacter denitrificans MT42 0.53 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.60 LRK55_RS11745 response regulator transcription factor — —
Lysobacter sp. OAE881 0.52 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.62 ABIE51_RS16515 response regulator transcription factor — —
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.60 LRK54_RS12010 response regulator transcription factor low > 59
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 OKGIIK_11850 ompR DNA-binding response regulator — —
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.60 ABZR86_RS11615 response regulator transcription factor — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_18125 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.33 CA264_07315 DNA-binding response regulator — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_0042 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.32 Echvi_3559 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain — —
Parabacteroides merdae CL09T00C40 0.35 HMPREF1078_RS17105 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.30 HMPREF1078_RS17705 response regulator transcription factor — —
Bacteroides stercoris CC31F 0.35 HMPREF1181_RS01705 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 HMPREF1181_RS11775 response regulator transcription factor — —

Not shown: 70 genomes with orthologs for PS417_23250 only; 0 genomes with orthologs for PS417_22780 only