Conservation of cofitness between PS417_20155 and PS417_22050 in Pseudomonas simiae WCS417

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_20155 23S rRNA methyltransferase 1.0 PS417_22050 ribonuclease BN 0.23 18
Pseudomonas fluorescens SBW25 0.94 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.98 PFLU_RS23665 YihY/virulence factor BrkB family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.94 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.98 PFLU_RS23665 YihY/virulence factor BrkB family protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.85 Pf1N1B4_569 Ribonuclease BN (EC 3.1.-.-) low > 87
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.81 Pf6N2E2_2870 Ribonuclease BN (EC 3.1.-.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_19055 23S rRNA methyltransferase 0.81 AO356_05085 ribonuclease BN low > 104
Pseudomonas sp. RS175 0.84 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 PFR28_00588 hypothetical protein low > 88
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.84 PfGW456L13_1913 Ribonuclease BN (EC 3.1.-.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_02715 23S rRNA methyltransferase 0.88 AO353_03295 ribonuclease BN low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.81 Psyr_3781 Ribonuclease BN low > 86
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.81 Psyr_3781 Ribonuclease BN low > 86
Pseudomonas sp. S08-1 0.73 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.49 OH686_07230 Inner membrane protein YihY, formerly thought to be RNase BN low > 80
Pseudomonas putida KT2440 0.69 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.76 PP_4560 putative Ribonuclease BN low > 96
Pseudomonas stutzeri RCH2 0.67 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.59 Psest_2881 Predicted membrane protein low > 67
Shewanella loihica PV-4 0.37 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.10 Shew_3545 rbn ribonuclease BN (RefSeq) low > 60
Shewanella amazonensis SB2B 0.36 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.09 Sama_3404 rbn ribonuclease BN (RefSeq) low > 62
Shewanella oneidensis MR-1 0.36 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.11 SO4401 rbn ribonuclease BN (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.35 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.10 Shewana3_0311 rbn ribonuclease BN (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.30 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.20 MIT1002_02941 ribonuclease BN/unknown domain fusion protein low > 70
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.22 GFF5116 Inner membrane protein YihY, formerly thought to be RNase BN low > 90
Mucilaginibacter yixingensis YX-36 DSM 26809 0.18 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 ABZR88_RS14785 YihY/virulence factor BrkB family protein low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.17 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA 0.18 CA264_13070 ribonuclease bn 0.31 69
Agrobacterium fabrum C58 0.16 Atu0735 RNA methyltransferase 0.16 Atu3590 transporter low > 89
Pedobacter sp. GW460-11-11-14-LB5 0.16 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.21 CA265_RS08075 ribonuclease BN low > 88
Rhodopseudomonas palustris CGA009 0.15 TX73_004885 methyltransferase 0.19 TX73_006405 YihY/virulence factor BrkB family protein low > 86
Azospirillum brasilense Sp245 0.14 AZOBR_RS01195 RNA methyltransferase 0.24 AZOBR_RS15035 membrane protein low > 97
Phaeobacter inhibens DSM 17395 0.13 PGA1_c34810 putative RNA methyltransferase 0.17 PGA1_c16090 putative tRNA-processing ribonuclease low > 62
Rhodospirillum rubrum S1H 0.12 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.17 Rru_A0430 Ribonuclease BN (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.12 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 0.11 Ga0059261_2467 Predicted membrane protein low > 68

Not shown: 70 genomes with orthologs for PS417_20155 only; 0 genomes with orthologs for PS417_22050 only