| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_2585 | | pseudouridylate synthase I | 1.0 | Psest_4007 | | Uncharacterized protein conserved in bacteria | 0.25 | 2 |
| Pseudomonas fluorescens FW300-N1B4 | 0.74 | Pf1N1B4_7 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.34 | Pf1N1B4_42 | | hypothetical protein | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.73 | PfGW456L13_3941 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.33 | PfGW456L13_3972 | | hypothetical protein | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.73 | Pf6N2E2_70 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.43 | Pf6N2E2_1111 | | cell wall degradation protein | low | > 103 |
| Pseudomonas sp. RS175 | 0.73 | PFR28_02817 | | tRNA pseudouridine synthase A | 0.45 | PFR28_01849 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.73 | AO353_20660 | | pseudouridine synthase | 0.47 | AO353_29055 | | peptidoglycan-binding protein | low | > 101 |
| Pseudomonas simiae WCS417 | 0.72 | PS417_18565 | | pseudouridine synthase | 0.47 | PS417_15375 | | peptidoglycan-binding protein | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.72 | AO356_21435 | | pseudouridine synthase | 0.44 | AO356_26185 | | peptidoglycan-binding protein | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.71 | PFLU_RS20545 | | tRNA pseudouridine(38-40) synthase TruA | 0.48 | PFLU_RS17345 | | L,D-transpeptidase family protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.71 | PFLU_RS20545 | | tRNA pseudouridine(38-40) synthase TruA | 0.48 | PFLU_RS17345 | | L,D-transpeptidase family protein | low | > 109 |
| Enterobacter sp. TBS_079 | 0.50 | MPMX20_03253 | | tRNA pseudouridine synthase A | 0.20 | MPMX20_01583 | | putative L,D-transpeptidase YcbB | low | > 85 |
| Enterobacter asburiae PDN3 | 0.49 | EX28DRAFT_0286 | | tRNA pseudouridine(38-40) synthase | 0.21 | EX28DRAFT_2011 | | Uncharacterized protein conserved in bacteria | low | > 76 |
| Escherichia fergusonii Becca | 0.49 | EFB2_01540 | | tRNA pseudouridine synthase A | 0.21 | EFB2_03139 | | putative L,D-transpeptidase YcbB | low | > 86 |
| Escherichia coli ECRC62 | 0.49 | BNILDI_13225 | truA | tRNA pseudouridine(38-40) synthase TruA | 0.21 | BNILDI_20215 | ldtD | L,D-transpeptidase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.49 | GFF1934 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.19 | GFF3682 | | L,D-transpeptidase YcbB | low | > 78 |
| Escherichia coli BW25113 | 0.49 | b2318 | truA | tRNA pseudouridine synthase A (NCBI) | 0.21 | b0925 | ycbB | predicted carboxypeptidase (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.49 | JDDGAC_26630 | truA | aspartate-semialdehyde dehydrogenase | 0.20 | JDDGAC_09010 | ldtD | L,D-transpeptidase | — | — |
| Escherichia coli BL21 | 0.49 | ECD_02243 | | tRNA pseudouridine(38-40) synthase | 0.21 | ECD_00929 | | murein L,D-transpeptidase | — | — |
| Escherichia coli ECRC101 | 0.49 | OKFHMN_22670 | truA | aspartate-semialdehyde dehydrogenase | 0.20 | OKFHMN_05400 | ldtD | L,D-transpeptidase | — | — |
| Escherichia coli ECRC101 | 0.49 | MCAODC_13710 | truA | aspartate-semialdehyde dehydrogenase | 0.20 | MCAODC_24790 | ldtD | L,D-transpeptidase | — | — |
| Escherichia coli ECRC99 | 0.49 | KEDOAH_05525 | truA | aspartate-semialdehyde dehydrogenase | 0.20 | KEDOAH_22335 | ldtD | L,D-transpeptidase | — | — |
| Escherichia coli Nissle 1917 | 0.49 | ECOLIN_RS13435 | | tRNA pseudouridine(38-40) synthase TruA | 0.21 | ECOLIN_RS04895 | | L,D-transpeptidase | low | > 52 |
| Escherichia coli ECOR38 | 0.49 | HEPCGN_21875 | truA | aspartate-semialdehyde dehydrogenase | 0.21 | HEPCGN_23125 | ldtD | L,D-transpeptidase | low | > 85 |
| Escherichia coli ECRC102 | 0.49 | NIAGMN_20445 | truA | aspartate-semialdehyde dehydrogenase | 0.20 | NIAGMN_03120 | ldtD | L,D-transpeptidase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.49 | OHPLBJKB_01387 | | tRNA pseudouridine synthase A | 0.21 | OHPLBJKB_02742 | | hypothetical protein | low | > 73 |
| Escherichia coli ECOR27 | 0.49 | NOLOHH_14305 | truA | tRNA pseudouridine(38-40) synthase TruA | 0.21 | NOLOHH_21960 | ldtD | L,D-transpeptidase | low | > 57 |
| Klebsiella michiganensis M5al | 0.49 | BWI76_RS20380 | | tRNA pseudouridine(38-40) synthase TruA | 0.20 | BWI76_RS09850 | | L,D-transpeptidase | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.48 | HER17_RS06990 | | tRNA pseudouridine(38-40) synthase TruA | 0.19 | HER17_RS12045 | | L,D-transpeptidase | low | > 75 |
| Shewanella sp. ANA-3 | 0.48 | Shewana3_1479 | truA | tRNA pseudouridine synthase A (RefSeq) | 0.23 | Shewana3_1674 | | peptidoglycan binding domain-containing protein (RefSeq) | low | > 73 |
| Dickeya dianthicola ME23 | 0.47 | DZA65_RS15370 | | tRNA pseudouridine(38-40) synthase TruA | 0.20 | DZA65_RS13465 | | L,D-transpeptidase | low | > 75 |
| Dickeya dadantii 3937 | 0.47 | DDA3937_RS14465 | | tRNA pseudouridine(38-40) synthase TruA | 0.21 | DDA3937_RS12930 | | L,D-transpeptidase | low | > 74 |
| Dickeya dianthicola 67-19 | 0.47 | HGI48_RS14435 | | tRNA pseudouridine(38-40) synthase TruA | 0.20 | HGI48_RS13005 | | L,D-transpeptidase | low | > 71 |
| Marinobacter adhaerens HP15 | 0.47 | HP15_1829 | | tRNA pseudouridine synthase A | 0.25 | HP15_2647 | | peptidoglycan-binding domain 1 protein | low | > 73 |
| Castellaniella sp019104865 MT123 | 0.38 | ABCV34_RS04265 | | tRNA pseudouridine(38-40) synthase TruA | 0.19 | ABCV34_RS14875 | | L,D-transpeptidase family protein | low | > 48 |
| Rhodanobacter denitrificans MT42 | 0.36 | LRK55_RS01480 | | tRNA pseudouridine(38-40) synthase TruA | 0.36 | LRK55_RS05975 | | L,D-transpeptidase family protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS01700 | | tRNA pseudouridine(38-40) synthase TruA | 0.36 | LRK54_RS06230 | | L,D-transpeptidase family protein | low | > 59 |
| Cupriavidus basilensis FW507-4G11 | 0.36 | RR42_RS14370 | | tRNA pseudouridine synthase A | 0.19 | RR42_RS09545 | | peptidase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.35 | OKGIIK_04830 | truA | tRNA pseudouridine(38-40) synthase TruA | 0.35 | OKGIIK_00395 | | Peptidoglycan-binding protein | — | — |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A3352 | | Pseudouridylate synthase (NCBI) | 0.18 | Rru_A1936 | | ErfK/YbiS/YcfS/YnhG (NCBI) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.27 | AMB_RS01225 | | tRNA pseudouridine(38-40) synthase TruA | 0.19 | AMB_RS11175 | | murein L,D-transpeptidase | low | > 64 |
| Dinoroseobacter shibae DFL-12 | 0.23 | Dshi_1938 | | tRNA pseudouridine synthase A (RefSeq) | 0.19 | Dshi_1619 | | Peptidoglycan-binding domain 1 protein (RefSeq) | low | > 64 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.22 | A4249_RS12340 | | tRNA pseudouridine(38-40) synthase TruA | 0.19 | A4249_RS08855 | | L,D-transpeptidase family protein | low | > 48 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.20 | Echvi_1728 | | pseudouridylate synthase I | 0.23 | Echvi_2132 | | Uncharacterized protein conserved in bacteria | low | > 79 |
Not shown: 58 genomes with orthologs for Psest_2585 only; 1 genomes with orthologs for Psest_4007 only