Conservation of cofitness between PS417_14725 and PS417_01635 in Pseudomonas simiae WCS417

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_14725 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) 1.0 PS417_01635 nitrogen regulation protein NR(I) 0.63 3
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS16710 nitrite reductase small subunit NirD 1.00 PFLU_RS01685 nitrogen regulation protein NR(I) 0.36 8
Pseudomonas fluorescens SBW25 0.90 PFLU_RS16710 nitrite reductase small subunit NirD 1.00 PFLU_RS01685 nitrogen regulation protein NR(I) low > 109
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_5041 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) 0.98 Pf1N1B4_1611 Nitrogen regulation protein NR(I) low > 87
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_1115 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) 0.96 Pf6N2E2_3826 Nitrogen regulation protein NR(I) low > 103
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_26205 nitrite reductase 0.96 AO356_09730 nitrogen regulation protein NR(I) low > 104
Pseudomonas sp. RS175 0.67 PFR28_01857 Nitrite reductase (NADH) small subunit 0.95 PFR28_04944 DNA-binding transcriptional regulator NtrC low > 88
Pseudomonas putida KT2440 0.66 PP_1706 Nitrite reductase 0.93 PP_5048 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG 0.43 7
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_3100 nitrite reductase [NAD(P)H], small subunit 0.95 Psyr_4822 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) — —
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_3100 nitrite reductase [NAD(P)H], small subunit 0.95 Psyr_4822 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) — —
Pseudomonas stutzeri RCH2 0.63 Psest_2407 nitrite reductase [NAD(P)H], small subunit 0.85 Psest_3932 nitrogen regulation protein NR(I) low > 67
Pseudomonas sp. S08-1 0.57 OH686_20570 Nitrite reductase [NAD(P)H] small subunit 0.93 OH686_10640 nitrogen regulation protein NR(I) low > 80
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS03860 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) 0.42 ABZR86_RS15515 nitrogen regulation protein NR(I) 0.26 73
Paraburkholderia graminis OAS925 0.43 ABIE53_001854 nitrite reductase (NADH) small subunit 0.55 ABIE53_002804 two-component system nitrogen regulation response regulator GlnG low > 113
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS37805 nitrite reductase small subunit NirD 0.56 QEN71_RS05675 nitrogen regulation protein NR(I) low > 153
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_00663 assimilatory nitrite reductase (NAD(P)H) small subunit (EC 1.7.1.4) 0.55 H281DRAFT_00454 nitrogen metabolism transcriptional regulator, NtrC, Fis family low > 103
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS18875 nitrite reductase small subunit NirD 0.58 ABZR87_RS11070 nitrogen regulation protein NR(I) 0.70 5
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS31790 nitrite reductase 0.58 RR42_RS12980 chemotaxis protein CheY low > 128
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS09845 nitrite reductase 0.55 BPHYT_RS12935 chemotaxis protein CheY — —
Ralstonia solanacearum UW163 0.40 UW163_RS21130 nitrite reductase (NAD(P)H) small subunit 0.58 UW163_RS13000 nitrogen regulation protein NR(I) — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS18000 nitrite reductase (NAD(P)H) small subunit 0.58 RALBFv3_RS15540 nitrogen regulation protein NR(I) — —
Ralstonia solanacearum GMI1000 0.40 RS_RS23030 nitrite reductase (NAD(P)H) small subunit 0.58 RS_RS06320 nitrogen regulation protein NR(I) — —
Alteromonas macleodii MIT1002 0.39 MIT1002_00699 Nitrite reductase [NAD(P)H] small subunit 0.65 MIT1002_03186 Nitrogen regulation protein NR(I) low > 70
Ralstonia solanacearum PSI07 0.39 RPSI07_RS05605 nitrite reductase (NAD(P)H) small subunit 0.58 RPSI07_RS17815 nitrogen regulation protein NR(I) low > 81
Herbaspirillum seropedicae SmR1 0.36 HSERO_RS14540 nitrite reductase 0.58 HSERO_RS15680 chemotaxis protein CheY 0.49 9
Serratia liquefaciens MT49 0.33 IAI46_23660 nitrite reductase small subunit NirD 0.68 IAI46_24960 nitrogen regulation protein NR(I) low > 86
Enterobacter sp. TBS_079 0.32 MPMX20_04270 Nitrite reductase (NADH) small subunit 0.67 MPMX20_04597 DNA-binding transcriptional regulator NtrC low > 85
Escherichia coli ECRC98 0.31 JDDGAC_20820 nirD nitrite reductase small subunit NirD 0.67 JDDGAC_17735 glnG nitrogen regulation protein NR(I) — —
Escherichia coli ECRC99 0.31 KEDOAH_10950 nirD nitrite reductase small subunit NirD 0.67 KEDOAH_14040 glnG nitrogen regulation protein NR(I) — —
Escherichia coli ECRC62 0.31 BNILDI_02530 nirD nitrite reductase small subunit NirD 0.67 BNILDI_05290 glnG nitrogen regulation protein NR(I) — —
Escherichia coli ECRC101 0.31 OKFHMN_17190 nirD nitrite reductase small subunit NirD 0.67 OKFHMN_14110 glnG nitrogen regulation protein NR(I) — —
Escherichia coli BW25113 0.31 b3366 nirD nitrite reductase small subunit (NCBI) 0.67 b3868 glnG fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) low > 76
Escherichia coli ECOR27 0.31 NOLOHH_08990 nirD nitrite reductase small subunit NirD 0.67 NOLOHH_06240 glnG nitrogen regulation protein NR(I) low > 57
Escherichia coli ECRC101 0.31 MCAODC_07720 nirD nitrite reductase small subunit NirD 0.67 MCAODC_04610 glnG nitrogen regulation protein NR(I) — —
Escherichia coli ECRC102 0.31 NIAGMN_14960 nirD nitrite reductase small subunit NirD 0.67 NIAGMN_11865 glnG nitrogen regulation protein NR(I) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_00336 Nitrite reductase (NADH) small subunit 0.67 OHPLBJKB_04184 DNA-binding transcriptional regulator NtrC low > 73
Escherichia coli BL21 0.31 ECD_03217 nitrite reductase (NADH) small subunit 0.67 ECD_03753 fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein low > 60
Escherichia fergusonii Becca 0.31 EFB2_00456 Nitrite reductase (NADH) small subunit 0.67 EFB2_04748 DNA-binding transcriptional regulator NtrC low > 86
Escherichia coli Nissle 1917 0.31 ECOLIN_RS19275 nitrite reductase small subunit NirD 0.67 ECOLIN_RS22295 nitrogen regulation protein NR(I) low > 52
Escherichia coli ECOR38 0.31 HEPCGN_16020 nirD nitrite reductase small subunit NirD 0.67 HEPCGN_12740 glnG nitrogen regulation protein NR(I) low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF3703 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) 0.67 GFF2220 Nitrogen regulation protein NR(I) low > 78

Not shown: 5 genomes with orthologs for PS417_14725 only; 47 genomes with orthologs for PS417_01635 only