| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_3316 | | Predicted P-loop-containing kinase | 1.0 | Psest_0032 | | D-alanyl-D-alanine carboxypeptidase | 0.28 | 4 |
| Pseudomonas sp. S08-1 | 0.88 | OH686_08560 | | RNase adapter protein RapZ | 0.67 | OH686_12475 | | Murein-DD-endopeptidase | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.87 | AO356_07050 | | glmZ(sRNA)-inactivating NTPase | 0.60 | AO356_01780 | | D-alanyl-D-alanine endopeptidase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.87 | Pf6N2E2_3270 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.60 | Pf6N2E2_2222 | | Murein-DD-endopeptidase (EC 3.4.99.-) | low | > 103 |
| Pseudomonas fluorescens SBW25-INTG | 0.87 | PFLU_RS04385 | | RNase adapter RapZ | 0.59 | PFLU_RS19205 | | D-alanyl-D-alanine endopeptidase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.87 | PFLU_RS04385 | | RNase adapter RapZ | 0.59 | PFLU_RS19205 | | D-alanyl-D-alanine endopeptidase | low | > 109 |
| Pseudomonas sp. RS175 | 0.86 | PFR28_00170 | | RNase adapter protein RapZ | 0.60 | PFR28_01222 | | D-alanyl-D-alanine endopeptidase | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.86 | PfGW456L13_5017 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.59 | PfGW456L13_2549 | | Murein-DD-endopeptidase (EC 3.4.99.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.86 | AO353_05195 | | glmZ(sRNA)-inactivating NTPase | 0.60 | AO353_20135 | | D-alanyl-D-alanine endopeptidase | low | > 101 |
| Pseudomonas simiae WCS417 | 0.86 | PS417_04330 | | glmZ(sRNA)-inactivating NTPase | 0.59 | PS417_17270 | | D-alanyl-D-alanine endopeptidase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.86 | Pf1N1B4_1083 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.59 | Pf1N1B4_3942 | | Murein-DD-endopeptidase (EC 3.4.99.-) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.85 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | 0.62 | Psyr_2414 | | murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.85 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | 0.62 | Psyr_2414 | | murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 | low | > 86 |
| Pseudomonas putida KT2440 | 0.84 | PP_0949 | | putative ATP-binding protein UPF0042 | 0.62 | PP_3794 | | periplasmic murein D-alanyl-D-alanine endopeptidase | low | > 96 |
| Marinobacter adhaerens HP15 | 0.53 | HP15_2445 | | protein yhbJ | 0.40 | HP15_3361 | | peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 | low | > 73 |
| Klebsiella michiganensis M5al | 0.47 | BWI76_RS25280 | | RNase adaptor protein RapZ | 0.60 | BWI76_RS19525 | | D-alanyl-D-alanine endopeptidase | low | > 92 |
| Enterobacter sp. TBS_079 | 0.47 | MPMX20_04111 | | RNase adapter protein RapZ | 0.60 | MPMX20_03103 | | D-alanyl-D-alanine endopeptidase | low | > 85 |
| Serratia liquefaciens MT49 | 0.47 | IAI46_22485 | | RNase adapter RapZ | 0.60 | IAI46_06820 | | D-alanyl-D-alanine endopeptidase | low | > 86 |
| Escherichia coli ECRC98 | 0.47 | JDDGAC_21550 | rapZ | RNase adapter RapZ | 0.59 | JDDGAC_27600 | pbpG | D-alanyl-D-alanine endopeptidase | — | — |
| Enterobacter asburiae PDN3 | 0.47 | EX28DRAFT_3259 | | Predicted P-loop-containing kinase | 0.61 | EX28DRAFT_0426 | | D-alanyl-D-alanine carboxypeptidase | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.47 | HER17_RS20075 | | RNase adapter RapZ | 0.62 | HER17_RS13260 | | D-alanyl-D-alanine endopeptidase | low | > 75 |
| Escherichia coli ECRC101 | 0.47 | MCAODC_08445 | rapZ | RNase adapter RapZ | 0.59 | MCAODC_14695 | pbpG | D-alanyl-D-alanine endopeptidase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.47 | OHPLBJKB_00495 | | RNase adapter protein RapZ | 0.59 | OHPLBJKB_01576 | | D-alanyl-D-alanine endopeptidase | low | > 73 |
| Dickeya dianthicola 67-19 | 0.47 | HGI48_RS01430 | | RNase adapter RapZ | 0.61 | HGI48_RS08820 | | D-alanyl-D-alanine endopeptidase | low | > 71 |
| Rahnella sp. WP5 | 0.47 | EX31_RS12385 | | RNase adapter RapZ | 0.56 | EX31_RS23805 | | D-alanyl-D-alanine endopeptidase | low | > 89 |
| Escherichia coli BW25113 | 0.47 | b3205 | yhbJ | hypothetical protein (NCBI) | 0.59 | b2134 | pbpG | penicillin-binding protein 7 (VIMSS) | low | > 76 |
| Escherichia coli ECRC62 | 0.47 | BNILDI_01810 | rapZ | RNase adapter RapZ | 0.59 | BNILDI_14135 | pbpG | D-alanyl-D-alanine endopeptidase | — | — |
| Escherichia coli Nissle 1917 | 0.47 | ECOLIN_RS18440 | | RNase adapter RapZ | 0.59 | ECOLIN_RS12500 | | D-alanyl-D-alanine endopeptidase | low | > 52 |
| Escherichia coli ECOR38 | 0.47 | HEPCGN_16800 | rapZ | RNase adapter RapZ | 0.59 | HEPCGN_02220 | pbpG | D-alanyl-D-alanine endopeptidase | 0.92 | 9 |
| Escherichia coli BL21 | 0.47 | ECD_03070 | | adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase | 0.59 | ECD_02064 | | D-alanyl-D-alanine endopeptidase | low | > 60 |
| Escherichia coli ECRC101 | 0.47 | OKFHMN_17925 | rapZ | RNase adapter RapZ | 0.59 | OKFHMN_23645 | pbpG | D-alanyl-D-alanine endopeptidase | — | — |
| Dickeya dadantii 3937 | 0.47 | DDA3937_RS01515 | | RNase adapter RapZ | 0.62 | DDA3937_RS08735 | | D-alanyl-D-alanine endopeptidase | low | > 74 |
| Escherichia coli ECOR27 | 0.47 | NOLOHH_09725 | rapZ | RNase adapter RapZ | 0.59 | NOLOHH_15185 | pbpG | D-alanyl-D-alanine endopeptidase | low | > 57 |
| Escherichia fergusonii Becca | 0.47 | EFB2_00618 | | RNase adapter protein RapZ | 0.59 | EFB2_01721 | | D-alanyl-D-alanine endopeptidase | low | > 86 |
| Escherichia coli ECRC102 | 0.47 | NIAGMN_15685 | rapZ | RNase adapter RapZ | 0.59 | NIAGMN_21410 | pbpG | D-alanyl-D-alanine endopeptidase | — | — |
| Dickeya dianthicola ME23 | 0.47 | DZA65_RS01495 | | RNase adapter RapZ | 0.61 | DZA65_RS09125 | | D-alanyl-D-alanine endopeptidase | low | > 75 |
| Escherichia coli ECRC99 | 0.47 | KEDOAH_10225 | rapZ | RNase adapter RapZ | 0.59 | KEDOAH_04540 | pbpG | D-alanyl-D-alanine endopeptidase | — | — |
| Erwinia tracheiphila SCR3 | 0.46 | LU632_RS21295 | rapZ | RNase adapter RapZ | 0.60 | LU632_RS09265 | pbpG | D-alanyl-D-alanine endopeptidase | low | > 74 |
| Pantoea sp. MT58 | 0.46 | IAI47_17200 | | RNase adapter RapZ | 0.57 | IAI47_13395 | | D-alanyl-D-alanine endopeptidase | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.46 | GFF2949 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.59 | GFF3811 | | Murein-DD-endopeptidase (EC 3.4.99.-) | low | > 78 |
| Vibrio cholerae E7946 ATCC 55056 | 0.44 | CSW01_12830 | | RNase adaptor protein RapZ | 0.61 | CSW01_18475 | | D-alanyl-D-alanine endopeptidase | low | > 62 |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_0669 | | hypothetical protein (RefSeq) | 0.64 | Shewana3_3292 | pbpG | D-alanyl-D-alanine endopeptidase (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.44 | SO3964 | | conserved hypothetical protein (NCBI ptt file) | 0.64 | SO0999 | pbpG | D-alanyl-D-alanine endopeptidase (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.44 | Sama_3091 | | hypothetical protein (RefSeq) | 0.59 | Sama_0072 | pbpG | D-alanyl-D-alanine endopeptidase (RefSeq) | low | > 62 |
Not shown: 39 genomes with orthologs for Psest_3316 only; 0 genomes with orthologs for Psest_0032 only