Conservation of cofitness between Psest_0133 and Psest_3033 in Pseudomonas stutzeri RCH2

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0133 type VI secretion protein, VC_A0107 family 1.0 Psest_3033 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.19 5
Pseudomonas sp. S08-1 0.88 OH686_12865 T6SS component TssB (ImpB/VipA) 0.95 OH686_05145 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA low > 80
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_2083 Uncharacterized protein ImpB 0.90 Pf1N1B4_3491 tRNA(Cytosine32)-2-thiocytidine synthetase low > 87
Pseudomonas fluorescens FW300-N2E3 0.83 AO353_09450 type VI secretion protein 0.90 AO353_02780 tRNA 2-thiocytidine biosynthesis protein TtcA 0.22 57
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_4298 Uncharacterized protein ImpB 0.90 Pf6N2E2_5711 tRNA(Cytosine32)-2-thiocytidine synthetase low > 103
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_12130 type VI secretion protein 0.89 AO356_19000 tRNA 2-thiocytidine biosynthesis protein TtcA low > 104
Pseudomonas fluorescens SBW25 0.78 PFLU_RS17295 type VI secretion system contractile sheath small subunit 0.89 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.46 28
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS17295 type VI secretion system contractile sheath small subunit 0.89 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA low > 109
Pseudomonas simiae WCS417 0.75 PS417_15325 type VI secretion protein 0.89 PS417_16415 tRNA 2-thiocytidine biosynthesis protein TtcA low > 88
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_14550 type VI secretion system contractile sheath small subunit 0.73 CSW01_07180 tRNA 2-thiocytidine(32) synthetase TtcA low > 62
Variovorax sp. OAS795 0.52 ABID97_RS12920 type VI secretion system contractile sheath small subunit 0.65 ABID97_RS06505 tRNA 2-thiocytidine(32) synthetase TtcA — —
Marinobacter adhaerens HP15 0.52 HP15_3476 uncharacterized conserved protein UCP028301 0.72 HP15_2116 PP-loop domain protein low > 73
Dickeya dianthicola 67-19 0.51 HGI48_RS07945 type VI secretion system contractile sheath small subunit 0.73 HGI48_RS12410 tRNA 2-thiocytidine(32) synthetase TtcA low > 71
Dickeya dianthicola ME23 0.51 DZA65_RS08540 type VI secretion system contractile sheath small subunit 0.72 DZA65_RS12850 tRNA 2-thiocytidine(32) synthetase TtcA low > 75
Dickeya dadantii 3937 0.51 DDA3937_RS07015 type VI secretion system contractile sheath small subunit 0.73 DDA3937_RS12330 tRNA 2-thiocytidine(32) synthetase TtcA low > 74
Pectobacterium carotovorum WPP14 0.50 HER17_RS04840 type VI secretion system contractile sheath small subunit 0.72 HER17_RS09605 tRNA 2-thiocytidine(32) synthetase TtcA low > 75
Escherichia coli ECRC62 0.47 BNILDI_00410 tssB Type VI secretion system protein TssB 0.71 BNILDI_18020 ttcA tRNA 2-thiocytidine(32) synthetase TtcA — —
Escherichia coli ECOR27 0.47 NOLOHH_02210 tssB Type VI secretion system protein TssB 0.71 NOLOHH_19870 ttcA tRNA 2-thiocytidine(32) synthetase TtcA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_03426 hypothetical protein 0.71 OHPLBJKB_02337 tRNA-cytidine(32) 2-sulfurtransferase low > 73
Escherichia coli ECRC102 0.47 NIAGMN_07700 tssB Type VI secretion system protein TssB 0.71 NIAGMN_26325 ttcA tRNA 2-thiocytidine(32) synthetase TtcA — —
Escherichia coli ECRC101 0.47 OKFHMN_09850 tssB Type VI secretion system protein TssB 0.71 OKFHMN_02155 ttcA tRNA 2-thiocytidine(32) synthetase TtcA — —
Escherichia coli ECRC99 0.47 KEDOAH_18300 tssB Type VI secretion system protein TssB 0.71 KEDOAH_26600 ttcA tRNA 2-thiocytidine(32) synthetase TtcA — —
Escherichia coli ECRC98 0.47 JDDGAC_13450 tssB Type VI secretion system protein TssB 0.71 JDDGAC_04715 ttcA tRNA 2-thiocytidine(32) synthetase TtcA — —
Escherichia coli ECRC101 0.47 MCAODC_00370 tssB Type VI secretion system protein TssB 0.71 MCAODC_16100 ttcA tRNA 2-thiocytidine(32) synthetase TtcA — —
Pseudomonas putida KT2440 0.46 PP_4074 conserved protein of unknown function 0.89 PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA low > 96
Escherichia fergusonii Becca 0.42 EFB2_03810 hypothetical protein 0.71 EFB2_02583 tRNA-cytidine(32) 2-sulfurtransferase low > 86
Rahnella sp. WP5 0.31 EX31_RS01850 type VI secretion system contractile sheath small subunit 0.70 EX31_RS06375 tRNA 2-thiocytidine(32) synthetase TtcA low > 89
Enterobacter asburiae PDN3 0.30 EX28DRAFT_0242 type VI secretion protein, VC_A0107 family 0.71 EX28DRAFT_1007 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control low > 76
Pantoea sp. MT58 0.30 IAI47_17475 type VI secretion system contractile sheath small subunit 0.72 IAI47_09475 tRNA 2-thiocytidine(32) synthetase TtcA low > 76
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS22065 type VI secretion protein 0.68 RR42_RS01445 tRNA 2-thiocytidine biosynthesis protein TtcA low > 128
Enterobacter sp. TBS_079 0.28 MPMX20_01627 hypothetical protein 0.72 MPMX20_02440 tRNA-cytidine(32) 2-sulfurtransferase low > 85
Escherichia coli Nissle 1917 0.27 ECOLIN_RS15695 type VI secretion system contractile sheath small subunit 0.71 ECOLIN_RS08065 tRNA 2-thiocytidine(32) synthetase TtcA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_4953 Uncharacterized conserved protein UCP028301 0.89 Psyr_3705 conserved hypothetical protein low > 86
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_4953 Uncharacterized conserved protein UCP028301 0.89 Psyr_3705 conserved hypothetical protein low > 86
Herbaspirillum seropedicae SmR1 0.23 HSERO_RS20180 type VI secretion protein 0.66 HSERO_RS22035 tRNA 2-thiocytidine biosynthesis protein TtcA low > 78
Ralstonia sp. UNC404CL21Col 0.22 ABZR87_RS20240 type VI secretion system contractile sheath small subunit 0.67 ABZR87_RS05700 tRNA 2-thiocytidine(32) synthetase TtcA low > 80
Agrobacterium fabrum C58 0.22 Atu4342 hypothetical protein 0.51 Atu1858 hypothetical protein low > 89
Acinetobacter radioresistens SK82 0.21 MPMX26_00962 hypothetical protein 0.65 MPMX26_00810 tRNA-cytidine(32) 2-sulfurtransferase low > 36
Ralstonia solanacearum UW163 0.21 UW163_RS19120 type VI secretion system contractile sheath small subunit 0.68 UW163_RS03335 tRNA 2-thiocytidine(32) synthetase TtcA — —
Ralstonia solanacearum IBSBF1503 0.21 RALBFv3_RS20055 type VI secretion system contractile sheath small subunit 0.68 RALBFv3_RS10245 tRNA 2-thiocytidine(32) synthetase TtcA low > 76

Not shown: 2 genomes with orthologs for Psest_0133 only; 39 genomes with orthologs for Psest_3033 only