| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF2390 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 | 1.0 | GFF2455 | | Putative sensory histidine kinase YfhA | 0.85 | 4 |
| Escherichia coli ECRC62 | 0.90 | BNILDI_02200 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.93 | BNILDI_11970 | qseF | two-component system response regulator QseF/GlrR | low | > 75 |
| Escherichia coli ECOR27 | 0.90 | NOLOHH_09320 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.93 | NOLOHH_13170 | qseF | two-component system response regulator QseF/GlrR | low | > 75 |
| Escherichia coli ECOR38 | 0.90 | HEPCGN_16350 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.93 | HEPCGN_20640 | qseF | two-component system response regulator QseF/GlrR | low | > 87 |
| Escherichia coli ECRC99 | 0.90 | KEDOAH_10620 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.93 | KEDOAH_06725 | qseF | two-component system response regulator QseF/GlrR | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.90 | OHPLBJKB_00415 | | Ribosomal RNA small subunit methyltransferase B | 0.93 | OHPLBJKB_01153 | | Transcriptional regulatory protein GlrR | low | > 73 |
| Escherichia coli BW25113 | 0.90 | b3289 | rsmB | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) | 0.93 | b2554 | yfhA | predicted DNA-binding response regulator in two-component system (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.90 | MCAODC_08050 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.93 | MCAODC_12025 | qseF | two-component system response regulator QseF/GlrR | low | > 87 |
| Escherichia coli BL21 | 0.90 | ECD_03139 | | 16S rRNA m(5)C967 methyltransferase, SAM-dependent | 0.93 | ECD_02446 | | response regulator regulating glmY sRNA in two-component system with sensor protein GlrK | low | > 61 |
| Escherichia coli ECRC100 | 0.90 | OKFHMN_17520 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.93 | OKFHMN_21495 | qseF | two-component system response regulator QseF/GlrR | low | > 80 |
| Escherichia coli ECRC98 | 0.90 | JDDGAC_21150 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.93 | JDDGAC_25160 | qseF | two-component system response regulator QseF/GlrR | low | > 86 |
| Escherichia coli ECRC102 | 0.90 | NIAGMN_15290 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.93 | NIAGMN_19265 | qseF | two-component system response regulator QseF/GlrR | — | — |
| Escherichia fergusonii Becca | 0.90 | EFB2_00535 | | Ribosomal RNA small subunit methyltransferase B | 0.93 | EFB2_01342 | | Transcriptional regulatory protein QseF | low | > 86 |
| Escherichia coli Nissle 1917 | 0.90 | ECOLIN_RS18875 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.93 | ECOLIN_RS14455 | | two-component system response regulator GlrR | low | > 55 |
| Klebsiella michiganensis M5al | 0.88 | BWI76_RS25680 | | 16S rRNA m5C967 methyltransferase | 0.92 | BWI76_RS21250 | | two-component system response regulator GlrR | low | > 92 |
| Enterobacter asburiae PDN3 | 0.85 | EX28DRAFT_0039 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase | 0.93 | EX28DRAFT_0096 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | low | > 76 |
| Enterobacter sp. TBS_079 | 0.83 | MPMX20_04196 | | Ribosomal RNA small subunit methyltransferase B | 0.93 | MPMX20_03423 | | Transcriptional regulatory protein QseF | low | > 85 |
| Serratia liquefaciens MT49 | 0.74 | IAI46_23275 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.89 | IAI46_19460 | | two-component system response regulator GlrR | low | > 86 |
| Dickeya dianthicola ME23 | 0.71 | DZA65_RS20350 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.88 | DZA65_RS16815 | | two-component system response regulator GlrR | low | > 75 |
| Dickeya dianthicola 67-19 | 0.71 | HGI48_RS19225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.87 | HGI48_RS15735 | | two-component system response regulator GlrR | low | > 71 |
| Dickeya dadantii 3937 | 0.71 | DDA3937_RS19135 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.88 | DDA3937_RS15640 | | two-component system response regulator GlrR | low | > 74 |
| Pantoea sp. MT58 | 0.71 | IAI47_02280 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.85 | IAI47_04945 | | two-component system response regulator GlrR | low | > 76 |
| Rahnella sp. WP5 | 0.71 | EX31_RS15985 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.88 | EX31_RS20615 | | two-component system response regulator GlrR | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.71 | HER17_RS02215 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.88 | HER17_RS05925 | | two-component system response regulator GlrR | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.70 | LU632_RS22480 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.85 | LU632_RS17930 | glrR | two-component system response regulator GlrR | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.59 | CSW01_00225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.33 | CSW01_10660 | | sigma-54-dependent Fis family transcriptional regulator | low | > 62 |
| Shewanella loihica PV-4 | 0.49 | Shew_3738 | | sun protein (RefSeq) | 0.36 | Shew_2341 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.43 | MIT1002_00018 | | Ribosomal RNA small subunit methyltransferase B | 0.63 | MIT1002_01326 | | Quorum-sensing regulator protein F | low | > 70 |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_4121 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.35 | Pf6N2E2_5565 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.41 | Pf1N1B4_1914 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.36 | Pf1N1B4_776 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | low | > 87 |
| Marinobacter adhaerens HP15 | 0.41 | HP15_3742 | | Fmu, rRNA SAM-dependent methyltransferase | 0.35 | HP15_523 | | two component, sigma54 specific, transcriptional regulator, Fis family | low | > 73 |
| Pseudomonas sp. RS175 | 0.41 | PFR28_04663 | | Ribosomal RNA small subunit methyltransferase B | 0.34 | PFR28_03376 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_652 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.35 | PfGW456L13_4775 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | low | > 87 |
| Kangiella aquimarina DSM 16071 | 0.36 | B158DRAFT_0396 | | ribosomal RNA small subunit methyltransferase RsmB | 0.32 | B158DRAFT_0521 | | PEP-CTERM-box response regulator transcription factor | low | > 40 |
| Dechlorosoma suillum PS | 0.34 | Dsui_0812 | | ribosomal RNA small subunit methyltransferase RsmB | 0.58 | Dsui_2360 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | low | > 51 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF1789 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.57 | GFF610 | | Putative sensory histidine kinase YfhA | low | > 90 |
| Herbaspirillum seropedicae SmR1 | 0.28 | HSERO_RS00355 | | methyltransferase | 0.53 | HSERO_RS23710 | | response regulator GlrR | low | > 78 |
| Acidovorax sp. GW101-3H11 | 0.27 | Ac3H11_4461 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.56 | Ac3H11_4011 | | Putative sensory histidine kinase YfhA | low | > 79 |
| Variovorax sp. SCN45 | 0.25 | GFF5878 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) | 0.58 | GFF7323 | | Transcriptional response regulatory protein GlrR | low | > 127 |
| Variovorax sp. OAS795 | 0.24 | ABID97_RS05360 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.58 | ABID97_RS06460 | | sigma 54-interacting transcriptional regulator | low | > 91 |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_02327 | | Ribosomal RNA small subunit methyltransferase B | 0.36 | MPMX19_04251 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | low | > 112 |
| Azospirillum brasilense Sp245 | 0.22 | AZOBR_RS00235 | | MFS transporter | 0.35 | AZOBR_RS21130 | | Fis family transcriptional regulator | low | > 97 |
| Agrobacterium fabrum C58 | 0.21 | Atu2825 | | Sun protein | 0.34 | Atu3296 | | two component response regulator for C4-dicarboxylate transport | low | > 89 |
| Rhizobium sp. OAE497 | 0.21 | ABIE40_RS19140 | | RsmB/NOP family class I SAM-dependent RNA methyltransferase | 0.35 | ABIE40_RS26335 | | sigma-54 dependent transcriptional regulator | low | > 107 |
| Dinoroseobacter shibae DFL-12 | 0.19 | Dshi_3033 | | Fmu (Sun) domain protein (RefSeq) | 0.29 | Dshi_1196 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | low | > 64 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.15 | A4249_RS13165 | | RsmB/NOP family class I SAM-dependent RNA methyltransferase | 0.34 | A4249_RS04415 | | sigma-54 dependent transcriptional regulator | low | > 48 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.13 | DVU3363 | sun | sun protein (TIGR) | 0.38 | DVU0539 | | sigma-54 dependent DNA-binding response regulator (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.12 | DvMF_2042 | | NusB/RsmB/TIM44 (RefSeq) | 0.38 | DvMF_2095 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | low | > 51 |
Not shown: 42 genomes with orthologs for GFF2390 only; 2 genomes with orthologs for GFF2455 only