Conservation of cofitness between PS417_10940 and PS417_07035 in Pseudomonas simiae WCS417

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_10940 sugar ABC transporter substrate-binding protein 1.0 PS417_07035 uracil-DNA glycosylase 0.19 2
Pseudomonas fluorescens SBW25 0.95 PFLU_RS11300 D-xylose ABC transporter substrate-binding protein 0.99 PFLU_RS07110 uracil-DNA glycosylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS11300 D-xylose ABC transporter substrate-binding protein 0.99 PFLU_RS07110 uracil-DNA glycosylase low > 109
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_28505 sugar ABC transporter substrate-binding protein 0.92 AO356_04635 uracil-DNA glycosylase low > 104
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_1455 Xylose ABC transporter, periplasmic xylose-binding protein XylF 0.92 Pf6N2E2_2772 Uracil-DNA glycosylase, family 1 low > 103
Pseudomonas sp. RS175 0.93 PFR28_02349 D-xylose-binding periplasmic protein 0.93 PFR28_00677 Uracil-DNA glycosylase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_2884 xylose-binding protein 0.90 Psyr_3970 Uracil-DNA glycosylase low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_2884 xylose-binding protein 0.90 Psyr_3970 Uracil-DNA glycosylase low > 86
Ralstonia sp. UNC404CL21Col 0.79 ABZR87_RS18220 D-xylose ABC transporter substrate-binding protein 0.42 ABZR87_RS02170 uracil-DNA glycosylase — —
Paraburkholderia bryophila 376MFSha3.1 0.77 H281DRAFT_03877 xylose-binding protein 0.47 H281DRAFT_05710 Uracil-DNA glycosylase — —
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS25870 D-xylose ABC transporter substrate-binding protein 0.43 QEN71_RS27575 uracil-DNA glycosylase — —
Dyella japonica UNC79MFTsu3.2 0.73 ABZR86_RS14420 D-xylose ABC transporter substrate-binding protein 0.62 ABZR86_RS12580 uracil-DNA glycosylase low > 74
Ralstonia solanacearum GMI1000 0.68 RS_RS24945 D-xylose ABC transporter substrate-binding protein 0.41 RS_RS14460 uracil-DNA glycosylase — —
Ralstonia solanacearum PSI07 0.65 RPSI07_RS07635 D-xylose ABC transporter substrate-binding protein 0.42 RPSI07_RS10725 uracil-DNA glycosylase — —
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS23505 D-xylose ABC transporter substrate-binding protein 0.41 RALBFv3_RS06515 uracil-DNA glycosylase — —
Ralstonia solanacearum UW163 0.65 UW163_RS16755 D-xylose ABC transporter substrate-binding protein 0.41 UW163_RS07110 uracil-DNA glycosylase — —
Serratia liquefaciens MT49 0.63 IAI46_00285 D-xylose ABC transporter substrate-binding protein 0.55 IAI46_19620 uracil-DNA glycosylase low > 86
Dickeya dianthicola ME23 0.61 DZA65_RS00315 D-xylose ABC transporter substrate-binding protein 0.56 DZA65_RS16955 uracil-DNA glycosylase low > 75
Dickeya dianthicola 67-19 0.61 HGI48_RS00315 D-xylose ABC transporter substrate-binding protein 0.56 HGI48_RS15875 uracil-DNA glycosylase low > 71
Dickeya dadantii 3937 0.61 DDA3937_RS20930 D-xylose ABC transporter substrate-binding protein 0.57 DDA3937_RS15790 uracil-DNA glycosylase low > 74
Klebsiella michiganensis M5al 0.61 BWI76_RS27030 D-xylose transporter subunit XylF 0.50 BWI76_RS21380 uracil-DNA glycosylase low > 92
Pantoea sp. MT58 0.60 IAI47_00190 D-xylose ABC transporter substrate-binding protein 0.49 IAI47_04825 uracil-DNA glycosylase low > 76
Enterobacter asburiae PDN3 0.60 EX28DRAFT_3831 D-xylose ABC transporter, substrate-binding protein 0.51 EX28DRAFT_0067 Uracil-DNA glycosylase (EC 3.2.2.-) low > 76
Escherichia coli ECRC101 0.60 MCAODC_06465 xylF D-xylose ABC transporter substrate-binding protein 0.52 MCAODC_11870 ung uracil-DNA glycosylase low > 87
Rahnella sp. WP5 0.60 EX31_RS09760 D-xylose ABC transporter substrate-binding protein 0.55 EX31_RS21775 uracil-DNA glycosylase low > 89
Escherichia coli ECRC102 0.60 NIAGMN_13710 xylF D-xylose ABC transporter substrate-binding protein 0.52 NIAGMN_19110 ung uracil-DNA glycosylase — —
Escherichia coli ECRC99 0.60 KEDOAH_12200 xylF D-xylose ABC transporter substrate-binding protein 0.52 KEDOAH_06880 ung uracil-DNA glycosylase — —
Escherichia coli ECRC98 0.60 JDDGAC_19580 xylF D-xylose ABC transporter substrate-binding protein 0.52 JDDGAC_25005 ung uracil-DNA glycosylase 0.50 67
Enterobacter sp. TBS_079 0.60 MPMX20_00164 D-xylose-binding periplasmic protein 0.51 MPMX20_03449 Uracil-DNA glycosylase low > 85
Escherichia coli ECRC100 0.60 OKFHMN_15950 xylF D-xylose ABC transporter substrate-binding protein 0.52 OKFHMN_21340 ung uracil-DNA glycosylase low > 80
Escherichia coli BW25113 0.59 b3566 xylF D-xylose transporter subunit (NCBI) 0.52 b2580 ung uracil-DNA glycosylase (NCBI) low > 76
Escherichia coli Nissle 1917 0.59 ECOLIN_RS20395 D-xylose ABC transporter substrate-binding protein 0.52 ECOLIN_RS14600 uracil-DNA glycosylase low > 55
Escherichia coli BL21 0.59 ECD_03418 D-xylose transporter subunit 0.52 ECD_02474 uracil-DNA-glycosylase low > 61
Escherichia coli ECRC62 0.59 BNILDI_03650 xylF D-xylose ABC transporter substrate-binding protein 0.52 BNILDI_11815 ung uracil-DNA glycosylase low > 75
Escherichia coli ECOR27 0.59 NOLOHH_07895 xylF D-xylose ABC transporter substrate-binding protein 0.52 NOLOHH_13010 ung uracil-DNA glycosylase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_00138 D-xylose-binding periplasmic protein 0.52 OHPLBJKB_01126 Uracil-DNA glycosylase low > 73
Escherichia fergusonii Becca 0.59 EFB2_00241 D-xylose-binding periplasmic protein 0.52 EFB2_01316 Uracil-DNA glycosylase low > 86
Escherichia coli ECOR38 0.59 HEPCGN_14835 xylF D-xylose ABC transporter substrate-binding protein 0.52 HEPCGN_20465 ung uracil-DNA glycosylase low > 87
Pectobacterium carotovorum WPP14 0.59 HER17_RS21080 D-xylose ABC transporter substrate-binding protein 0.56 HER17_RS05755 uracil-DNA glycosylase low > 75
Variovorax sp. SCN45 0.37 GFF5603 D-xylose ABC transporter, substrate-binding protein XylF 0.41 GFF5889 Uracil-DNA glycosylase, family 1 (EC 3.2.2.27) low > 127
Variovorax sp. OAS795 0.36 ABID97_RS01175 D-xylose ABC transporter substrate-binding protein 0.41 ABID97_RS05285 uracil-DNA glycosylase low > 91
Rhizobium sp. OAE497 0.35 ABIE40_RS14020 D-xylose ABC transporter substrate-binding protein 0.57 ABIE40_RS14835 uracil-DNA glycosylase low > 107
Phaeobacter inhibens DSM 17395 0.34 PGA1_262p00430 glucose transporter, periplasmic substrate-binding component (from data) 0.34 PGA1_c16900 uracil-DNA glycosylase Ung low > 62
Sinorhizobium meliloti 1021 0.33 SM_b20902 sugar uptake ABC transporter substrate-binding protein precursor 0.59 SMc03195 uracil-DNA glycosylase low > 103
Agrobacterium fabrum C58 0.31 Atu3576 xylose ABC transporter substrate-binding protein 0.61 Atu2455 uracil-DNA glycosylase low > 89
Acidovorax sp. GW101-3H11 0.23 Ac3H11_610 L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) 0.42 Ac3H11_773 Uracil-DNA glycosylase, family 1 low > 79

Not shown: 6 genomes with orthologs for PS417_10940 only; 41 genomes with orthologs for PS417_07035 only