| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_10720 | | chemotaxis protein CheY | 1.0 | PS417_06365 | | RNA polymerase sigma factor | 0.76 | 6 |
| Pseudomonas fluorescens SBW25-INTG | 0.99 | PFLU_RS10765 | | UvrY/SirA/GacA family response regulator transcription factor | 0.99 | PFLU_RS06430 | | RNA polymerase sigma factor RpoS | 0.78 | 5 |
| Pseudomonas fluorescens SBW25 | 0.99 | PFLU_RS10765 | | UvrY/SirA/GacA family response regulator transcription factor | 0.99 | PFLU_RS06430 | | RNA polymerase sigma factor RpoS | low | > 109 |
| Pseudomonas sp. RS175 | 0.96 | PFR28_01410 | | Response regulator GacA | 0.94 | PFR28_00427 | | RNA polymerase sigma factor RpoS | 0.34 | 8 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.93 | Psyr_2897 | | regulatory protein, LuxR:Response regulator receiver | 0.94 | Psyr_1374 | | RNA polymerase, sigma 38 subunit, RpoS | 0.69 | 3 |
| Pseudomonas syringae pv. syringae B728a | 0.93 | Psyr_2897 | | regulatory protein, LuxR:Response regulator receiver | 0.94 | Psyr_1374 | | RNA polymerase, sigma 38 subunit, RpoS | 0.39 | 28 |
| Pseudomonas putida KT2440 | 0.89 | PP_4099 | | two-componenent system BarA/UvrY - regulatory subunit | 0.93 | PP_1623 | | RNA polymerase, sigma S (sigma 38) factor | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.88 | Psest_2260 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | 0.86 | Psest_2806 | | RNA polymerase sigma factor RpoS | low | > 67 |
| Pseudomonas fluorescens FW300-N2E2 | 0.88 | Pf6N2E2_2022 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.95 | Pf6N2E2_3037 | | RNA polymerase sigma factor RpoS | 0.25 | 97 |
| Pseudomonas fluorescens FW300-N2C3 | 0.88 | AO356_00355 | | chemotaxis protein CheY | 0.95 | AO356_05885 | | RNA polymerase sigma factor RpoS | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.87 | Pf1N1B4_5619 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.96 | Pf1N1B4_3115 | | RNA polymerase sigma factor RpoS | 0.72 | 2 |
| Pseudomonas fluorescens GW456-L13 | 0.87 | PfGW456L13_2885 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.96 | PfGW456L13_4674 | | RNA polymerase sigma factor RpoS | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_21830 | | chemotaxis protein CheY | 0.95 | AO353_16615 | | RNA polymerase sigma factor RpoS | 0.66 | 15 |
| Pseudomonas sp. S08-1 | 0.86 | OH686_00335 | | BarA-associated response regulator UvrY ( GacA SirA) | 0.89 | OH686_18185 | | RNA polymerase sigma factor RpoS | low | > 80 |
| Marinobacter adhaerens HP15 | 0.66 | HP15_1567 | | two component transcriptional regulator, LuxR family | 0.67 | HP15_1283 | | RNA polymerase, sigma 70 subunit, RpoD family | low | > 73 |
| Vibrio cholerae E7946 ATCC 55056 | 0.65 | CSW01_06135 | | two-component system response regulator UvrY | 0.61 | CSW01_02835 | | RNA polymerase sigma factor RpoS | — | — |
| Shewanella sp. ANA-3 | 0.61 | Shewana3_1608 | | response regulator (RefSeq) | 0.61 | Shewana3_1124 | | RNA polymerase, sigma 38 subunit, RpoS (RefSeq) | low | > 73 |
| Rahnella sp. WP5 | 0.61 | EX31_RS24145 | | UvrY/SirA/GacA family response regulator transcription factor | 0.63 | EX31_RS07825 | | RNA polymerase sigma factor RpoS | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.60 | LU632_RS10190 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | 0.62 | LU632_RS06480 | rpoS | RNA polymerase sigma factor RpoS | — | — |
| Shewanella oneidensis MR-1 | 0.60 | SO1860 | | DNA-binding response regulator, LuxR family (NCBI ptt file) | 0.61 | SO3432 | rpoS | RNA polymerase sigma-38 factor (NCBI ptt file) | low | > 76 |
| Pantoea sp. MT58 | 0.59 | IAI47_12470 | | UvrY/SirA/GacA family response regulator transcription factor | 0.63 | IAI47_04235 | | RNA polymerase sigma factor RpoS | low | > 76 |
| Serratia liquefaciens MT49 | 0.59 | IAI46_09205 | | UvrY/SirA/GacA family response regulator transcription factor | 0.63 | IAI46_03790 | | RNA polymerase sigma factor RpoS | low | > 86 |
| Shewanella loihica PV-4 | 0.59 | Shew_1824 | | response regulator (RefSeq) | 0.61 | Shew_1213 | | RpoD family RNA polymerase sigma factor (RefSeq) | — | — |
| Escherichia coli BW25113 | 0.59 | b1914 | uvrY | response regulator (NCBI) | 0.63 | b2741 | rpoS | RNA polymerase sigma factor (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.59 | EFB2_02032 | | Response regulator UvrY | 0.63 | EFB2_01169 | | RNA polymerase sigma factor RpoS | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.59 | OHPLBJKB_01815 | | Response regulator UvrY | 0.63 | OHPLBJKB_00992 | | RNA polymerase sigma factor RpoS | low | > 73 |
| Dickeya dianthicola 67-19 | 0.58 | HGI48_RS13800 | | UvrY/SirA/GacA family response regulator transcription factor | 0.62 | HGI48_RS16945 | | RNA polymerase sigma factor RpoS | low | > 71 |
| Dickeya dianthicola ME23 | 0.58 | DZA65_RS14290 | | UvrY/SirA/GacA family response regulator transcription factor | 0.62 | DZA65_RS18020 | | RNA polymerase sigma factor RpoS | low | > 75 |
| Dickeya dadantii 3937 | 0.58 | DDA3937_RS13705 | | UvrY/SirA/GacA family response regulator transcription factor | 0.62 | DDA3937_RS16875 | | RNA polymerase sigma factor RpoS | — | — |
| Enterobacter sp. TBS_079 | 0.58 | MPMX20_02839 | | Response regulator UvrY | 0.63 | MPMX20_03627 | | RNA polymerase sigma factor RpoS | low | > 85 |
| Enterobacter asburiae PDN3 | 0.58 | EX28DRAFT_0633 | | two component transcriptional regulator, LuxR family | 0.63 | EX28DRAFT_2837 | | RNA polymerase, sigma 38 subunit, RpoS | low | > 76 |
| Shewanella amazonensis SB2B | 0.58 | Sama_1607 | | response regulator (RefSeq) | 0.61 | Sama_1044 | | RNA polymerase sigma-38 factor (RefSeq) | low | > 62 |
| Escherichia coli ECOR38 | 0.58 | HEPCGN_04175 | uvrC | excinuclease ABC subunit UvrC | 0.63 | HEPCGN_19675 | rpoS | RNA polymerase sigma factor RpoS | low | > 85 |
| Escherichia coli ECRC62 | 0.58 | BNILDI_15230 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | 0.63 | BNILDI_10860 | rpoS | RNA polymerase sigma factor RpoS | — | — |
| Pectobacterium carotovorum WPP14 | 0.58 | HER17_RS07710 | | UvrY/SirA/GacA family response regulator transcription factor | 0.62 | HER17_RS04350 | | RNA polymerase sigma factor RpoS | low | > 75 |
| Escherichia coli ECRC102 | 0.58 | NIAGMN_02230 | uvrC | excinuclease ABC subunit UvrC | 0.63 | NIAGMN_18265 | rpoS | RNA polymerase sigma factor RpoS | — | — |
| Escherichia coli ECOR27 | 0.58 | NOLOHH_16440 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | 0.63 | NOLOHH_12310 | rpoS | RNA polymerase sigma factor RpoS | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.58 | GFF1699 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.63 | GFF4788 | | RNA polymerase sigma factor RpoS | 0.69 | 17 |
| Escherichia coli ECRC101 | 0.58 | MCAODC_19570 | uvrC | excinuclease ABC subunit UvrC | 0.63 | MCAODC_11020 | rpoS | RNA polymerase sigma factor RpoS | — | — |
| Escherichia coli ECRC98 | 0.58 | JDDGAC_00410 | uvrC | excinuclease ABC subunit UvrC | 0.63 | JDDGAC_24160 | rpoS | RNA polymerase sigma factor RpoS | — | — |
| Escherichia coli ECRC101 | 0.58 | OKFHMN_25820 | uvrC | excinuclease ABC subunit UvrC | 0.63 | OKFHMN_20495 | rpoS | RNA polymerase sigma factor RpoS | — | — |
| Klebsiella michiganensis M5al | 0.57 | BWI76_RS18335 | | DNA-binding response regulator | 0.63 | BWI76_RS22645 | | RNA polymerase sigma factor RpoS | low | > 92 |
| Alteromonas macleodii MIT1002 | 0.50 | MIT1002_02154 | | Response regulator UvrY | 0.61 | MIT1002_00625 | | RNA polymerase sigma factor RpoS | low | > 70 |
Not shown: 15 genomes with orthologs for PS417_10720 only; 6 genomes with orthologs for PS417_06365 only