Conservation of cofitness between GFF4283 and GFF1079 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 1.0 GFF1079 Homoserine kinase (EC 2.7.1.39) 0.41 10
Escherichia coli HS(pFamp)R (ATCC 700891) 0.97 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase 0.94 OHPLBJKB_03657 Homoserine kinase low > 73
Escherichia coli ECRC62 0.97 BNILDI_22950 proC pyrroline-5-carboxylate reductase 0.94 BNILDI_08165 thrB homoserine kinase — —
Escherichia coli ECOR27 0.97 NOLOHH_01535 proC pyrroline-5-carboxylate reductase 0.94 NOLOHH_03435 thrB homoserine kinase low > 57
Escherichia coli BL21 0.97 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding 0.94 ECD_00003 homoserine kinase low > 60
Escherichia coli BW25113 0.97 b0386 proC pyrroline-5-carboxylate reductase (NCBI) 0.94 b0003 thrB homoserine kinase (NCBI) 0.81 43
Escherichia coli Nissle 1917 0.97 ECOLIN_RS02345 pyrroline-5-carboxylate reductase 0.94 ECOLIN_RS00015 homoserine kinase low > 52
Escherichia coli ECOR38 0.97 HEPCGN_07250 proC pyrroline-5-carboxylate reductase 0.94 HEPCGN_09110 thrB homoserine kinase low > 85
Escherichia coli ECRC101 0.96 OKFHMN_08610 proC pyrroline-5-carboxylate reductase 0.94 OKFHMN_11105 thrB homoserine kinase — —
Escherichia coli ECRC101 0.96 MCAODC_27835 proC pyrroline-5-carboxylate reductase 0.94 MCAODC_01620 thrB homoserine kinase — —
Escherichia fergusonii Becca 0.96 EFB2_03670 Pyrroline-5-carboxylate reductase 0.93 EFB2_04040 Homoserine kinase low > 86
Escherichia coli ECRC98 0.96 JDDGAC_12265 proC pyrroline-5-carboxylate reductase 0.94 JDDGAC_14700 thrB homoserine kinase — —
Escherichia coli ECRC99 0.96 KEDOAH_19355 proC pyrroline-5-carboxylate reductase 0.94 KEDOAH_17050 thrB homoserine kinase — —
Escherichia coli ECRC102 0.96 NIAGMN_06665 proC pyrroline-5-carboxylate reductase 0.94 NIAGMN_08955 thrB homoserine kinase — —
Enterobacter asburiae PDN3 0.94 EX28DRAFT_2585 pyrroline-5-carboxylate reductase 0.92 EX28DRAFT_3615 homoserine kinase (EC 2.7.1.39) — —
Enterobacter sp. TBS_079 0.94 MPMX20_00976 Pyrroline-5-carboxylate reductase 0.92 MPMX20_00711 Homoserine kinase 0.90 11
Klebsiella michiganensis M5al 0.94 BWI76_RS06170 pyrroline-5-carboxylate reductase 0.91 BWI76_RS04250 homoserine kinase — —
Erwinia tracheiphila SCR3 0.72 LU632_RS18995 proC pyrroline-5-carboxylate reductase 0.78 LU632_RS02615 thrB homoserine kinase 0.70 7
Pantoea sp. MT58 0.64 IAI47_14945 pyrroline-5-carboxylate reductase 0.83 IAI47_16210 homoserine kinase 0.83 27
Synechococcus elongatus PCC 7942 0.35 Synpcc7942_2058 proC pyrroline-5-carboxylate reductase 0.22 Synpcc7942_1440 thrB homoserine kinase — —
Shewanella amazonensis SB2B 0.29 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) 0.53 Sama_0906 homoserine kinase (RefSeq) 0.95 17
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS10425 pyrroline-5-carboxylate reductase 0.16 ABZR86_RS15980 homoserine kinase (EC 2.7.1.39) (from data) 0.85 66
Shewanella loihica PV-4 0.29 Shew_1136 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.53 Shew_1080 homoserine kinase (RefSeq) 0.88 43
Lysobacter sp. OAE881 0.28 ABIE51_RS16065 pyrroline-5-carboxylate reductase 0.18 ABIE51_RS17525 homoserine kinase 0.83 47
Alteromonas macleodii MIT1002 0.28 MIT1002_03062 Pyrroline-5-carboxylate reductase 0.50 MIT1002_03085 Homoserine kinase 0.95 32
Dickeya dadantii 3937 0.27 DDA3937_RS17305 pyrroline-5-carboxylate reductase 0.82 DDA3937_RS18410 homoserine kinase 0.79 6
Pectobacterium carotovorum WPP14 0.27 HER17_RS03805 pyrroline-5-carboxylate reductase 0.82 HER17_RS02800 homoserine kinase — —
Shewanella oneidensis MR-1 0.27 SO3354 proC pyrroline-5-carboxylate reductase (NCBI ptt file) 0.52 SO3414 thrB homoserine kinase (NCBI ptt file) 0.95 23
Vibrio cholerae E7946 ATCC 55056 0.27 CSW01_02450 pyrroline-5-carboxylate reductase 0.72 CSW01_11970 homoserine kinase low > 62
Rahnella sp. WP5 0.27 EX31_RS02690 pyrroline-5-carboxylate reductase 0.81 EX31_RS03940 homoserine kinase 0.97 9
Dickeya dianthicola 67-19 0.26 HGI48_RS17350 pyrroline-5-carboxylate reductase 0.82 HGI48_RS18340 homoserine kinase — —
Shewanella sp. ANA-3 0.26 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) 0.52 Shewana3_1140 homoserine kinase (RefSeq) 0.93 19
Serratia liquefaciens MT49 0.26 IAI46_21415 pyrroline-5-carboxylate reductase 0.81 IAI46_03035 homoserine kinase 0.65 26
Dickeya dianthicola ME23 0.26 DZA65_RS18440 pyrroline-5-carboxylate reductase 0.82 DZA65_RS19480 homoserine kinase — —
Rhodanobacter sp. FW510-T8 0.26 OKGIIK_11135 proC pyrroline-5-carboxylate reductase 0.19 OKGIIK_13565 thrB homoserine kinase low > 52
Rhodanobacter denitrificans MT42 0.26 LRK55_RS04030 pyrroline-5-carboxylate reductase 0.19 LRK55_RS10000 homoserine kinase — —
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS04260 pyrroline-5-carboxylate reductase 0.19 LRK54_RS10360 homoserine kinase 0.62 42
Xanthomonas campestris pv. campestris strain 8004 0.23 Xcc-8004.1710.1 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.18 Xcc-8004.2956.1 Homoserine kinase (EC 2.7.1.39) low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_2479 pyrroline-5-carboxylate reductase 0.22 Echvi_2001 homoserine kinase (EC 2.7.1.39) (from data) 0.76 23
Mucilaginibacter yixingensis YX-36 DSM 26809 0.19 ABZR88_RS09865 pyrroline-5-carboxylate reductase 0.23 ABZR88_RS18955 homoserine kinase — —
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS18505 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.21 CA265_RS23470 homoserine kinase (EC 2.7.1.39) (from data) 0.95 6

Not shown: 60 genomes with orthologs for GFF4283 only; 2 genomes with orthologs for GFF1079 only