Conservation of cofitness between ECD_01084 and ECD_04246 in Escherichia coli BL21

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01084 DUF177 family protein 1.0 ECD_04246 16S rRNA m(2)G1207 methyltransferase, SAM-dependent 0.81 8
Escherichia coli Nissle 1917 1.00 ECOLIN_RS06290 23S rRNA accumulation protein YceD 1.00 ECOLIN_RS25090 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 55
Escherichia coli ECRC98 1.00 JDDGAC_07260 yceD 23S rRNA accumulation protein YceD 0.99 JDDGAC_14895 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 86
Escherichia coli ECOR27 1.00 NOLOHH_21130 yceD 23S rRNA accumulation protein YceD 0.99 NOLOHH_03620 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Escherichia coli BW25113 1.00 b1088 yceD hypothetical protein (NCBI) 1.00 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) 0.43 2
Escherichia coli ECRC100 1.00 OKFHMN_03600 yceD 23S rRNA accumulation protein YceD 0.99 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 80
Escherichia coli ECRC101 1.00 MCAODC_22960 yceD 23S rRNA accumulation protein YceD 0.99 MCAODC_01815 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.62 26
Escherichia coli ECRC99 1.00 KEDOAH_24155 yceD 23S rRNA accumulation protein YceD 0.99 KEDOAH_16845 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Escherichia coli ECRC102 1.00 NIAGMN_24230 yceD 23S rRNA accumulation protein YceD 0.99 NIAGMN_09150 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Escherichia coli ECOR38 1.00 HEPCGN_23880 yceD 23S rRNA accumulation protein YceD 0.99 HEPCGN_09305 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.70 70
Escherichia coli ECRC62 1.00 BNILDI_19290 yceD 23S rRNA accumulation protein YceD 0.99 BNILDI_07980 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Escherichia fergusonii Becca 1.00 EFB2_02887 Large ribosomal RNA subunit accumulation protein YceD 0.99 EFB2_04076 Ribosomal RNA small subunit methyltransferase C low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_02578 Large ribosomal RNA subunit accumulation protein YceD 0.99 OHPLBJKB_03691 Ribosomal RNA small subunit methyltransferase C low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF3370 COG1399 protein, clustered with ribosomal protein L32p 0.93 GFF1031 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.68 48
Enterobacter sp. TBS_079 0.94 MPMX20_01768 Large ribosomal RNA subunit accumulation protein YceD 0.90 MPMX20_00669 Ribosomal RNA small subunit methyltransferase C low > 85
Enterobacter asburiae PDN3 0.94 EX28DRAFT_1841 Predicted metal-binding, possibly nucleic acid-binding protein 0.88 EX28DRAFT_3579 16S RNA G1207 methylase RsmC low > 76
Klebsiella michiganensis M5al 0.87 BWI76_RS11065 hypothetical protein 0.92 BWI76_RS04080 16S rRNA (guanine(1207)-N(2))-methyltransferase — —
Rahnella sp. WP5 0.85 EX31_RS24410 23S rRNA accumulation protein YceD 0.68 EX31_RS04120 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.86 4
Pectobacterium carotovorum WPP14 0.84 HER17_RS08625 23S rRNA accumulation protein YceD 0.70 HER17_RS18080 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Erwinia tracheiphila SCR3 0.84 LU632_RS14845 yceD 23S rRNA accumulation protein YceD 0.75 LU632_RS03750 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 74
Dickeya dadantii 3937 0.84 DDA3937_RS13145 23S rRNA accumulation protein YceD 0.72 DDA3937_RS03190 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 74
Dickeya dianthicola ME23 0.83 DZA65_RS13680 23S rRNA accumulation protein YceD 0.72 DZA65_RS03385 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Dickeya dianthicola 67-19 0.82 HGI48_RS13210 23S rRNA accumulation protein YceD 0.73 HGI48_RS03340 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 71
Pantoea sp. MT58 0.79 IAI47_12095 23S rRNA accumulation protein YceD 0.76 IAI47_16375 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Serratia liquefaciens MT49 0.73 IAI46_09765 23S rRNA accumulation protein YceD 0.71 IAI46_02860 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_10120 23S rRNA accumulation protein YceD 0.39 CSW01_03280 16S rRNA methyltransferase — —
Shewanella loihica PV-4 0.44 Shew_1598 hypothetical protein (RefSeq) 0.26 Shew_3230 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.44 SO2781 conserved hypothetical protein (NCBI ptt file) 0.27 SO0828 conserved hypothetical protein (NCBI ptt file) — —
Shewanella sp. ANA-3 0.44 Shewana3_2563 hypothetical protein (RefSeq) 0.27 Shewana3_3447 16S rRNA m(2)G 1207 methyltransferase (RefSeq) — —
Pseudomonas stutzeri RCH2 0.27 Psest_1684 Predicted metal-binding, possibly nucleic acid-binding protein 0.31 Psest_3224 16S RNA G1207 methylase RsmC — —
Marinobacter adhaerens HP15 0.25 HP15_2217 protein containing DUF177 0.24 HP15_2266 rRNA (guanine-N(2)-)-methyltransferase — —
Pseudomonas sp. RS175 0.22 PFR28_03014 Large ribosomal RNA subunit accumulation protein YceD 0.27 PFR28_03623 Ribosomal RNA small subunit methyltransferase C — —
Pseudomonas putida KT2440 0.19 PP_1910 conserved protein of unknown function 0.27 PP_0761 Ribosomal RNA small subunit methyltransferase C — —
Pseudomonas fluorescens SBW25-INTG 0.18 PFLU_RS23075 hypothetical protein 0.26 PFLU_RS04570 class I SAM-dependent methyltransferase — —
Pseudomonas fluorescens SBW25 0.18 PFLU_RS23075 hypothetical protein 0.26 PFLU_RS04570 class I SAM-dependent methyltransferase low > 109
Pseudomonas simiae WCS417 0.17 PS417_21460 metal-binding protein 0.26 PS417_04525 16S rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.17 AO353_01385 metal-binding protein 0.28 AO353_14995 16S rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.17 Pf1N1B4_455 COG1399 protein, clustered with ribosomal protein L32p 0.27 Pf1N1B4_2953 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) — —
Pseudomonas fluorescens GW456-L13 0.17 PfGW456L13_2101 COG1399 protein, clustered with ribosomal protein L32p 0.27 PfGW456L13_1616 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) — —
Pseudomonas fluorescens FW300-N2C3 0.16 AO356_20145 metal-binding protein 0.27 AO356_06940 16S rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.16 Pf6N2E2_5948 COG1399 protein, clustered with ribosomal protein L32p 0.27 Pf6N2E2_3247 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.16 Psyr_1643 Protein of unknown function DUF177 0.26 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.16 Psyr_1643 Protein of unknown function DUF177 0.26 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase — —

Not shown: 9 genomes with orthologs for ECD_01084 only; 3 genomes with orthologs for ECD_04246 only