Conservation of cofitness between ECD_02953 and ECD_03850 in Escherichia coli BL21

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02953 23S rRNA m(2)G1835 methyltransferase, SAM-dependent 1.0 ECD_03850 tRNA m(5)U54 methyltransferase, SAM-dependent; tmRNA m(5)U341 methyltransferase low > 61
Escherichia coli ECOR38 1.00 HEPCGN_17415 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.99 HEPCGN_12190 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.49 60
Escherichia coli BW25113 1.00 b3084 ygjO putative enzyme (VIMSS) 1.00 b3965 trmA tRNA (uracil-5-)-methyltransferase (NCBI) low > 76
Escherichia coli ECOR27 0.99 NOLOHH_10360 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 NOLOHH_05680 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Escherichia coli ECRC62 0.99 BNILDI_01155 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 BNILDI_05845 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS17790 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.99 ECOLIN_RS22900 tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC101 0.99 MCAODC_09075 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.99 MCAODC_04035 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 87
Escherichia coli ECRC100 0.99 OKFHMN_18560 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 OKFHMN_13535 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 80
Escherichia coli ECRC99 0.99 KEDOAH_09585 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 KEDOAH_14625 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC98 0.99 JDDGAC_22195 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 JDDGAC_17160 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 86
Escherichia coli ECRC102 0.99 NIAGMN_16325 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 NIAGMN_11285 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia fergusonii Becca 0.99 EFB2_00728 Ribosomal RNA large subunit methyltransferase G 0.99 EFB2_04645 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00618 Ribosomal RNA large subunit methyltransferase G 1.00 OHPLBJKB_04085 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 73
Enterobacter asburiae PDN3 0.93 EX28DRAFT_3153 16S RNA G1207 methylase RsmC 0.92 EX28DRAFT_4428 tRNA (uracil(54)-C(5))-methyltransferase low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_03995 Ribosomal RNA large subunit methyltransferase G 0.93 MPMX20_04515 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF3186 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.94 GFF2351 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) low > 78
Klebsiella michiganensis M5al 0.71 BWI76_RS24680 23S rRNA (guanine(1835)-N(2))-methyltransferase 0.93 BWI76_RS00885 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 92
Serratia liquefaciens MT49 0.67 IAI46_22185 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.82 IAI46_24455 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 86
Erwinia tracheiphila SCR3 0.65 LU632_RS02335 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.78 LU632_RS19550 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Pectobacterium carotovorum WPP14 0.63 HER17_RS18680 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.80 HER17_RS00975 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Pantoea sp. MT58 0.62 IAI47_02950 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.83 IAI47_00950 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 76
Dickeya dadantii 3937 0.61 DDA3937_RS02850 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.81 DDA3937_RS00990 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Rahnella sp. WP5 0.58 EX31_RS08350 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.77 EX31_RS14140 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 89
Dickeya dianthicola 67-19 0.58 HGI48_RS02825 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.80 HGI48_RS20385 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 71
Dickeya dianthicola ME23 0.58 DZA65_RS03000 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.80 DZA65_RS21430 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Alteromonas macleodii MIT1002 0.40 MIT1002_00689 Ribosomal RNA large subunit methyltransferase G 0.59 MIT1002_03370 tRNA (uracil(54)-C(5))-methyltransferase low > 70
Pseudomonas stutzeri RCH2 0.37 Psest_3440 16S RNA G1207 methylase RsmC 0.50 Psest_3451 tRNA (uracil-5-)-methyltransferase low > 67
Shewanella amazonensis SB2B 0.36 Sama_2548 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.60 Sama_0193 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 62
Pseudomonas putida KT2440 0.36 PP_4648 Ribosomal RNA large subunit methyltransferase G 0.48 PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 96
Shewanella oneidensis MR-1 0.36 SO1097 conserved hypothetical protein (NCBI ptt file) 0.60 SO0206 trmA tRNA (uracil-5-)-methyltransferase (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_11685 ribosomal RNA large subunit methyltransferase G 0.65 CSW01_00785 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 62
Pseudomonas sp. S08-1 0.35 OH686_16135 23S rRNA (guanine(1835)-N(2))-methyltransferase 0.47 OH686_16060 tRNA (uracil(54)-C(5))-methyltransferase low > 80
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_13950 50S rRNA methyltransferase 0.47 AO353_13905 tRNA (uracil-5-)-methyltransferase low > 101
Shewanella sp. ANA-3 0.35 Shewana3_0932 methyltransferase small (RefSeq) 0.60 Shewana3_0179 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 73
Shewanella loihica PV-4 0.34 Shew_2886 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.61 Shew_0138 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 60
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_1438 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.47 PfGW456L13_1430 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) 0.27 44
Pseudomonas simiae WCS417 0.34 PS417_24335 50S rRNA methyltransferase 0.48 PS417_24385 tRNA (uracil-5-)-methyltransferase low > 88
Pseudomonas fluorescens SBW25 0.34 PFLU_RS26260 class I SAM-dependent methyltransferase 0.47 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS26260 class I SAM-dependent methyltransferase 0.47 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase 0.47 Psyr_4287 tRNA (uracil-5-)-methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase 0.47 Psyr_4287 tRNA (uracil-5-)-methyltransferase low > 86
Pseudomonas sp. RS175 0.33 PFR28_03798 Ribosomal RNA large subunit methyltransferase G 0.48 PFR28_03809 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 88
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_15650 50S rRNA methyltransferase 0.47 AO356_15600 tRNA (uracil-5-)-methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_5071 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.48 Pf6N2E2_5063 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 103
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_2763 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.47 Pf1N1B4_2754 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 87

Not shown: 1 genomes with orthologs for ECD_02953 only; 2 genomes with orthologs for ECD_03850 only