Conservation of cofitness between ECD_03886 and ECD_02838 in Escherichia coli BL21

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03886 malate synthase A 1.0 ECD_02838 putative type II secretion protein GspD 0.60 12
Escherichia coli BW25113 1.00 b4014 aceB malate synthase (NCBI) 0.38 b3325 yheF putative general protein secretion protein (VIMSS) low > 76
Escherichia coli ECRC101 0.99 MCAODC_03770 aceB malate synthase A 0.37 MCAODC_15265 etpD variant type II secretion system secretin EtpD low > 87
Escherichia coli ECRC102 0.99 NIAGMN_11020 aceB malate synthase A 0.37 NIAGMN_28605 etpD variant type II secretion system secretin EtpD — —
Escherichia coli ECRC100 0.99 OKFHMN_13270 aceB malate synthase A 0.37 OKFHMN_00285 etpD variant type II secretion system secretin EtpD low > 80
Escherichia coli ECRC98 0.99 JDDGAC_16895 aceB malate synthase A 0.37 JDDGAC_30295 etpD variant type II secretion system secretin EtpD low > 86
Escherichia coli ECOR27 0.99 NOLOHH_05415 aceB malate synthase A 1.00 NOLOHH_10975 gspD general secretion pathway protein D low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_04036 Malate synthase A 1.00 OHPLBJKB_00739 Type II secretion system protein D low > 73
Escherichia coli ECOR38 0.99 HEPCGN_11910 aceB malate synthase A 1.00 HEPCGN_18050 gspD general secretion pathway protein D low > 87
Escherichia fergusonii Becca 0.99 EFB2_04596 Malate synthase A 0.99 EFB2_00845 Secretin GspD 2 low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS25510 malate synthase A 1.00 ECOLIN_RS17085 type II secretion system secretin GspD — —
Klebsiella michiganensis M5al 0.92 BWI76_RS01660 malate synthase A 0.38 BWI76_RS05090 type II secretion system protein GspD low > 92
Enterobacter asburiae PDN3 0.91 EX28DRAFT_4330 malate synthase A 0.37 EX28DRAFT_2079 type II secretion system protein D low > 76
Enterobacter sp. TBS_079 0.90 MPMX20_00231 Malate synthase A 0.35 MPMX20_01515 Putative secretin GspD low > 85
Pectobacterium carotovorum WPP14 0.82 HER17_RS02290 malate synthase A 0.38 HER17_RS06685 type II secretion system secretin GspD low > 75
Rahnella sp. WP5 0.82 EX31_RS11740 malate synthase A 0.39 EX31_RS16165 type II secretion system secretin GspD low > 89
Dickeya dadantii 3937 0.82 DDA3937_RS19060 malate synthase A 0.24 DDA3937_RS12700 type II secretion system secretin GspD low > 74
Dickeya dianthicola ME23 0.81 DZA65_RS20270 malate synthase A 0.23 DZA65_RS16270 type II secretion system secretin GspD low > 75
Dickeya dianthicola 67-19 0.81 HGI48_RS19150 malate synthase A 0.23 HGI48_RS15450 type II secretion system secretin GspD low > 71
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_03825 malate synthase A 0.49 CSW01_13790 type II secretion system protein GspD — —
Shewanella sp. ANA-3 0.68 Shewana3_2943 malate synthase (RefSeq) 0.48 Shewana3_0151 general secretion pathway protein D (RefSeq) low > 73
Shewanella amazonensis SB2B 0.68 Sama_2381 malate synthase (RefSeq) 0.46 Sama_0169 type II and III secretion system protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.67 SO1483 aceB Malate synthase (EC 2.3.3.9) (from data) 0.48 SO0166 gspD general secretion pathway protein D (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.67 Shew_1275 malate synthase (RefSeq) 0.45 Shew_3619 general secretion pathway protein D (RefSeq) low > 60
Caulobacter crescentus NA1000 0.50 CCNA_01843 malate synthase 0.23 CCNA_00172 type II secretion pathway protein D low > 66
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_01843 malate synthase 0.23 CCNA_00172 type II secretion pathway protein D low > 67
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.310.1 Malate synthase (EC 2.3.3.9) 0.21 Xcc-8004.942.1 hypothetical protein low > 74
Rhodanobacter denitrificans FW104-10B01 0.47 LRK54_RS10590 malate synthase A 0.08 LRK54_RS10010 type II secretion system secretin GspD low > 59
Rhodanobacter denitrificans MT42 0.46 LRK55_RS10230 malate synthase A 0.08 LRK55_RS09650 type II secretion system secretin GspD low > 63
Ralstonia solanacearum PSI07 0.45 RPSI07_RS17310 malate synthase A 0.16 RPSI07_RS09520 type II secretion system protein GspD low > 81
Ralstonia solanacearum UW163 0.45 UW163_RS13500 malate synthase A 0.16 UW163_RS05885 type II secretion system protein GspD — —
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS00170 malate synthase A 0.16 RALBFv3_RS07740 type II secretion system protein GspD 0.56 32
Ralstonia solanacearum GMI1000 0.44 RS_RS06835 malate synthase A 0.15 RS_RS15640 type II secretion system protein GspD low > 80
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS11625 malate synthase A 0.15 ABZR87_RS03450 type II secretion system secretin GspD low > 80
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS12175 malate synthase 0.15 RR42_RS19520 general secretion pathway protein GspD low > 128

Not shown: 18 genomes with orthologs for ECD_03886 only; 22 genomes with orthologs for ECD_02838 only