Conservation of cofitness between ECD_00078 and ECD_02138 in Escherichia coli BL21

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00078 global transcription factor 1.0 ECD_02138 microcin J25 efflux ABC transporter permease/ATPase 0.50 44
Escherichia coli BW25113 1.00 b0076 leuO probable transcriptional activator for leuABCD operon (VIMSS) 1.00 b2211 yojI fused predicted multidrug transport subunits of ABC superfamily: membrane component/ATP-binding component (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03582 HTH-type transcriptional regulator LeuO 1.00 OHPLBJKB_01499 ABC transporter ATP-binding/permease protein YojI low > 73
Escherichia coli ECRC62 1.00 BNILDI_08560 leuO transcriptional regulator LeuO 1.00 BNILDI_13715 yojI microcin J25 efflux ABC transporter YojI low > 75
Escherichia coli ECRC100 0.99 OKFHMN_10705 leuO transcriptional regulator LeuO 0.99 OKFHMN_23220 yojI microcin J25 efflux ABC transporter YojI low > 80
Escherichia coli ECRC98 0.99 JDDGAC_14300 leuO transcriptional regulator LeuO 1.00 JDDGAC_27180 yojI microcin J25 efflux ABC transporter YojI low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS00410 transcriptional regulator LeuO 1.00 ECOLIN_RS12915 microcin J25 efflux ABC transporter YojI
Escherichia coli ECRC102 0.99 NIAGMN_08555 leuO transcriptional regulator LeuO 0.99 NIAGMN_20985 yojI microcin J25 efflux ABC transporter YojI
Escherichia fergusonii Becca 0.99 EFB2_03970 HTH-type transcriptional regulator LeuO 1.00 EFB2_01644 ABC transporter ATP-binding/permease protein YojI low > 86
Escherichia coli ECRC99 0.99 KEDOAH_17450 leuO transcriptional regulator LeuO 1.00 KEDOAH_04965 yojI microcin J25 efflux ABC transporter YojI
Escherichia coli ECOR27 0.99 NOLOHH_03050 leuO transcriptional regulator LeuO 1.00 NOLOHH_14795 yojI microcin J25 efflux ABC transporter YojI low > 75
Escherichia coli ECRC101 0.99 MCAODC_01220 leuO transcriptional regulator LeuO 1.00 MCAODC_14270 yojI microcin J25 efflux ABC transporter YojI low > 87
Escherichia coli ECOR38 0.99 HEPCGN_08685 leuO transcriptional regulator LeuO 1.00 HEPCGN_22485 yojI microcin J25 efflux ABC transporter YojI low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF162 Probable transcriptional activator for leuABCD operon 0.90 GFF1825 Type I secretion system ATPase, LssB family LapB low > 78
Enterobacter asburiae PDN3 0.83 EX28DRAFT_3672 Transcriptional regulator 0.90 EX28DRAFT_0365 cyclic peptide transporter low > 76
Klebsiella michiganensis M5al 0.82 BWI76_RS04690 transcriptional regulator LeuO 0.86 BWI76_RS19885 multidrug ABC transporter permease/ATP-binding protein low > 92
Enterobacter sp. TBS_079 0.81 MPMX20_00770 HTH-type transcriptional regulator LeuO 0.90 MPMX20_03171 ABC transporter ATP-binding/permease protein YojI low > 85
Serratia liquefaciens MT49 0.56 IAI46_03365 transcriptional regulator LeuO 0.67 IAI46_20605 multidrug ABC transporter permease/ATP-binding protein low > 86
Rahnella sp. WP5 0.55 EX31_RS03675 transcriptional regulator LeuO 0.70 EX31_RS10860 multidrug ABC transporter permease/ATP-binding protein low > 89
Variovorax sp. OAS795 0.22 ABID97_RS26910 LysR family transcriptional regulator 0.23 ABID97_RS21440 cyclic peptide export ABC transporter
Pseudomonas putida KT2440 0.22 PP_2436 Transcriptional regulator, LysR family 0.27 PP_4216 pyoverdine ABC export system, fused ATPase and permease components
Pseudomonas sp. RS175 0.22 PFR28_01264 PCP degradation transcriptional activation protein 0.27 PFR28_02877 ABC transporter ATP-binding/permease protein YojI low > 88
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_01560 LysR family transcriptional regulator 0.27 AO356_21125 cyclic peptide transporter low > 104
Pseudomonas fluorescens FW300-N1B4 0.21 Pf1N1B4_3992 Transcriptional regulator, LysR family 0.26 Pf1N1B4_141 PvdE, pyoverdine ABC export system, fused ATPase and permease components low > 87
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_2187 Transcriptional regulator, LysR family 0.30 Pf6N2E2_1626 Putative ATP-binding component of a transport system low > 103
Pseudomonas syringae pv. syringae B728a 0.21 Psyr_2473 transcriptional regulator, LysR family 0.28 Psyr_1963 Cyclic peptide transporter low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.21 Psyr_2473 transcriptional regulator, LysR family 0.28 Psyr_1963 Cyclic peptide transporter low > 86
Pseudomonas simiae WCS417 0.21 PS417_16995 LysR family transcriptional regulator 0.25 PS417_11705 cyclic peptide transporter low > 88
Pseudomonas fluorescens SBW25 0.21 PFLU_RS18945 LysR family transcriptional regulator 0.25 PFLU_RS15720 cyclic peptide export ABC transporter low > 109
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_2596 Transcriptional regulator, LysR family 0.26 PfGW456L13_2385 PvdE, pyoverdine ABC export system, fused ATPase and permease components low > 87
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS18945 LysR family transcriptional regulator 0.25 PFLU_RS15720 cyclic peptide export ABC transporter low > 109
Ralstonia solanacearum GMI1000 0.20 RS_RS10140 LysR family transcriptional regulator 0.18 RS_RS20175 cyclic peptide export ABC transporter low > 80
Variovorax sp. SCN45 0.20 GFF4989 Transcriptional regulator, LysR family 0.24 GFF1627 ABC-type siderophore export system, fused ATPase and permease components low > 127
Pseudomonas sp. S08-1 0.20 OH686_00880 Transcriptional regulator, LysR family 0.48 OH686_01030 ABC-type siderophore export system, fused ATPase and permease components low > 80
Herbaspirillum seropedicae SmR1 0.20 HSERO_RS24025 LysR family transcriptional regulator 0.23 HSERO_RS11765 peptide ABC transporter
Paraburkholderia sabiae LMG 24235 0.19 QEN71_RS33090 LysR family transcriptional regulator 0.23 QEN71_RS15805 cyclic peptide export ABC transporter low > 153
Paraburkholderia bryophila 376MFSha3.1 0.19 H281DRAFT_03847 transcriptional regulator, LysR family 0.28 H281DRAFT_04928 putative ATP-binding cassette transporter
Paraburkholderia graminis OAS925 0.18 ABIE53_004542 DNA-binding transcriptional LysR family regulator 0.28 ABIE53_001686 putative ATP-binding cassette transporter low > 113
Azospirillum sp. SherDot2 0.18 MPMX19_03531 PCP degradation transcriptional activation protein 0.26 MPMX19_03242 ABC transporter ATP-binding/permease protein YojI low > 112
Burkholderia phytofirmans PsJN 0.18 BPHYT_RS30310 LysR family transcriptional regulator 0.25 BPHYT_RS20255 peptide ABC transporter ATP-binding protein
Azospirillum brasilense Sp245 0.17 AZOBR_RS27530 LysR family transcriptional regulator 0.26 AZOBR_RS23340 cyclic peptide transporter low > 97
Pantoea sp. MT58 0.17 IAI47_19555 LysR family transcriptional regulator 0.71 IAI47_06535 multidrug ABC transporter permease/ATP-binding protein low > 76
Dickeya dadantii 3937 0.15 DDA3937_RS21355 LysR family transcriptional regulator 0.66 DDA3937_RS05380 multidrug ABC transporter permease/ATP-binding protein low > 74
Pectobacterium carotovorum WPP14 0.13 HER17_RS04190 LysR family transcriptional regulator 0.68 HER17_RS16105 multidrug ABC transporter permease/ATP-binding protein low > 75
Dyella japonica UNC79MFTsu3.2 0.11 ABZR86_RS07360 LysR family transcriptional regulator 0.23 ABZR86_RS17915 ATP-binding cassette domain-containing protein low > 74

Not shown: 26 genomes with orthologs for ECD_00078 only; 1 genomes with orthologs for ECD_02138 only