Conservation of cofitness between ECD_00443 and ECD_00204 in Escherichia coli BL21

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00443 DnaK co-chaperone, thioredoxin-like protein 1.0 ECD_00204 putative membrane-bound lytic murein transglycosylase D 0.75 20
Escherichia coli BW25113 1.00 b0492 ybbN putative thioredoxin-like protein (VIMSS) 1.00 b0211 mltD predicted membrane-bound lytic murein transglycosylase D (NCBI) 0.23 18
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03182 putative protein YbbN 0.90 OHPLBJKB_03450 Membrane-bound lytic murein transglycosylase D 0.44 53
Escherichia fergusonii Becca 1.00 EFB2_03563 Chaperedoxin 0.90 EFB2_03832 Membrane-bound lytic murein transglycosylase D low > 86
Escherichia coli ECRC100 1.00 OKFHMN_07985 cnoX chaperedoxin 0.90 OKFHMN_09985 mltD murein transglycosylase D low > 80
Escherichia coli ECRC101 1.00 MCAODC_27200 cnoX chaperedoxin 0.90 MCAODC_00500 mltD murein transglycosylase D low > 87
Escherichia coli ECRC102 1.00 NIAGMN_06035 cnoX chaperedoxin 0.90 NIAGMN_07835 mltD murein transglycosylase D — —
Escherichia coli ECOR38 1.00 HEPCGN_06615 cnoX chaperedoxin 0.90 HEPCGN_07925 mltD murein transglycosylase D low > 87
Escherichia coli ECRC98 1.00 JDDGAC_11630 cnoX chaperedoxin 0.90 JDDGAC_13580 mltD murein transglycosylase D low > 86
Escherichia coli ECRC99 1.00 KEDOAH_19985 cnoX chaperedoxin 0.90 KEDOAH_18170 mltD murein transglycosylase D — —
Escherichia coli ECOR27 1.00 NOLOHH_00975 cnoX chaperedoxin 0.90 NOLOHH_02330 mltD murein transglycosylase D low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS02910 chaperedoxin 1.00 ECOLIN_RS01155 murein transglycosylase D low > 55
Escherichia coli ECRC62 0.99 BNILDI_22395 cnoX chaperedoxin 0.90 BNILDI_09340 mltD murein transglycosylase D low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF4410 FIG000875: Thioredoxin domain-containing protein EC-YbbN 0.83 GFF4043 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_2467 Thioredoxin domain-containing protein 0.87 EX28DRAFT_2683 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) low > 76
Enterobacter sp. TBS_079 0.88 MPMX20_01090 Chaperedoxin 0.88 MPMX20_00896 Membrane-bound lytic murein transglycosylase D low > 85
Klebsiella michiganensis M5al 0.81 BWI76_RS06935 co-chaperone YbbN 0.86 BWI76_RS05435 murein transglycosylase D 0.15 69
Pantoea sp. MT58 0.79 IAI47_14380 co-chaperone YbbN 0.68 IAI47_15345 murein transglycosylase D low > 76
Erwinia tracheiphila SCR3 0.77 LU632_RS15275 co-chaperone YbbN 0.65 LU632_RS01075 mltD murein transglycosylase D low > 74
Serratia liquefaciens MT49 0.75 IAI46_05335 co-chaperone YbbN 0.63 IAI46_04130 murein transglycosylase D low > 86
Rahnella sp. WP5 0.74 EX31_RS22595 co-chaperone YbbN 0.64 EX31_RS21205 murein transglycosylase D low > 89
Pectobacterium carotovorum WPP14 0.73 HER17_RS15510 co-chaperone YbbN 0.64 HER17_RS05450 murein transglycosylase D low > 75
Dickeya dianthicola ME23 0.73 DZA65_RS06345 co-chaperone YbbN 0.63 DZA65_RS17270 murein transglycosylase D low > 75
Dickeya dianthicola 67-19 0.71 HGI48_RS06000 co-chaperone YbbN 0.63 HGI48_RS16185 murein transglycosylase D low > 71
Dickeya dadantii 3937 0.70 DDA3937_RS05950 co-chaperone YbbN 0.64 DDA3937_RS16065 murein transglycosylase D low > 74
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_04995 co-chaperone YbbN 0.31 CSW01_11400 lytic transglycosylase low > 62
Alteromonas macleodii MIT1002 0.42 MIT1002_00529 Thioredoxin 0.32 MIT1002_02495 Membrane-bound lytic murein transglycosylase D precursor low > 70
Shewanella oneidensis MR-1 0.39 SO2017 hypothetical thioredoxin-like protein (NCBI ptt file) 0.29 SO2564 transglycosylase, Slt family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.38 Shewana3_2442 thioredoxin domain-containing protein (RefSeq) 0.29 Shewana3_2370 MltD domain-containing protein (RefSeq) — —
Shewanella loihica PV-4 0.37 Shew_2231 thioredoxin domain-containing protein (RefSeq) 0.30 Shew_2115 lytic transglycosylase, catalytic (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_06735 thioredoxin 0.33 AO353_23485 lytic transglycosylase low > 101
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS26920 thioredoxin 0.33 PFLU_RS12905 transglycosylase SLT domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.31 PFLU_RS26920 thioredoxin 0.33 PFLU_RS12905 transglycosylase SLT domain-containing protein low > 109
Pseudomonas stutzeri RCH2 0.30 Psest_3559 thioredoxin 0.30 Psest_2070 FOG: LysM repeat low > 67
Pseudomonas putida KT2440 0.30 PP_0510 Thioredoxin 0.32 PP_4145 Membrane-bound lytic murein transglycosylase D low > 96
Pseudomonas simiae WCS417 0.30 PS417_25285 thioredoxin 0.33 PS417_12215 lytic transglycosylase low > 88
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_4466 Thioredoxin 0.34 Psyr_1760 Peptidoglycan-binding LysM:SLT:MLTD_N low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_4466 Thioredoxin 0.34 Psyr_1760 Peptidoglycan-binding LysM:SLT:MLTD_N low > 86
Pseudomonas fluorescens FW300-N1B4 0.30 Pf1N1B4_2645 FIG000875: Thioredoxin domain-containing protein EC-YbbN 0.32 Pf1N1B4_4595 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) — —
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_1308 FIG000875: Thioredoxin domain-containing protein EC-YbbN 0.34 PfGW456L13_3341 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) low > 87
Pseudomonas sp. RS175 0.30 PFR28_03953 Chaperedoxin 0.34 PFR28_01551 Membrane-bound lytic murein transglycosylase D low > 88
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_4915 FIG000875: Thioredoxin domain-containing protein EC-YbbN 0.34 Pf6N2E2_586 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_14910 thioredoxin 0.34 AO356_24475 lytic transglycosylase low > 104
Ralstonia sp. UNC404CL21Col 0.19 ABZR87_RS09195 thioredoxin 0.24 ABZR87_RS14160 transglycosylase SLT domain-containing protein low > 80
Variovorax sp. OAS795 0.18 ABID97_RS01710 tetratricopeptide repeat protein 0.22 ABID97_RS14725 transglycosylase SLT domain-containing protein low > 91
Variovorax sp. SCN45 0.18 GFF5511 FIG000875: Thioredoxin domain-containing protein EC-YbbN 0.23 GFF1116 Membrane-bound lytic murein transglycosylase D low > 127

Not shown: 35 genomes with orthologs for ECD_00443 only; 6 genomes with orthologs for ECD_00204 only