Conservation of cofitness between ECD_00419 and ECD_00204 in Escherichia coli BL21

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00419 DUF454 family inner membrane protein 1.0 ECD_00204 putative membrane-bound lytic murein transglycosylase D 0.56 4
Escherichia coli ECRC99 1.00 KEDOAH_19790 ybaN DUF454 domain-containing protein 0.90 KEDOAH_18170 mltD murein transglycosylase D — —
Escherichia coli ECOR38 1.00 HEPCGN_06790 ybaN DUF454 domain-containing protein 0.90 HEPCGN_07925 mltD murein transglycosylase D low > 87
Escherichia coli ECRC102 1.00 NIAGMN_06230 ybaN DUF454 domain-containing protein 0.90 NIAGMN_07835 mltD murein transglycosylase D — —
Escherichia coli ECRC62 1.00 BNILDI_22525 ybaN DUF454 domain-containing protein 0.90 BNILDI_09340 mltD murein transglycosylase D low > 75
Escherichia coli ECOR27 1.00 NOLOHH_01105 ybaN DUF454 domain-containing protein 0.90 NOLOHH_02330 mltD murein transglycosylase D low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03206 Inner membrane protein YbaN 0.90 OHPLBJKB_03450 Membrane-bound lytic murein transglycosylase D low > 73
Escherichia coli ECRC100 1.00 OKFHMN_08175 ybaN DUF454 domain-containing protein 0.90 OKFHMN_09985 mltD murein transglycosylase D low > 80
Escherichia coli ECRC98 1.00 JDDGAC_11825 ybaN DUF454 domain-containing protein 0.90 JDDGAC_13580 mltD murein transglycosylase D low > 86
Escherichia coli BW25113 1.00 b0468 ybaN conserved inner membrane protein (NCBI) 1.00 b0211 mltD predicted membrane-bound lytic murein transglycosylase D (NCBI) low > 76
Escherichia fergusonii Becca 0.99 EFB2_03590 Inner membrane protein YbaN 0.90 EFB2_03832 Membrane-bound lytic murein transglycosylase D low > 86
Escherichia coli ECRC101 0.99 MCAODC_27400 ybaN DUF454 domain-containing protein 0.90 MCAODC_00500 mltD murein transglycosylase D low > 87
Escherichia coli Nissle 1917 0.99 ECOLIN_RS02785 DUF454 family protein 1.00 ECOLIN_RS01155 murein transglycosylase D — —
Enterobacter sp. TBS_079 0.80 MPMX20_01070 Inner membrane protein YbaN 0.88 MPMX20_00896 Membrane-bound lytic murein transglycosylase D low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF4386 FIG039061: hypothetical protein related to heme utilization 0.83 GFF4043 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) low > 78
Enterobacter asburiae PDN3 0.77 EX28DRAFT_2490 Uncharacterized protein conserved in bacteria 0.87 EX28DRAFT_2683 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) low > 76
Klebsiella michiganensis M5al 0.74 BWI76_RS06810 hypothetical protein 0.86 BWI76_RS05435 murein transglycosylase D low > 92
Rahnella sp. WP5 0.62 EX31_RS22500 DUF454 family protein 0.64 EX31_RS21205 murein transglycosylase D low > 89
Pantoea sp. MT58 0.62 IAI47_14485 DUF454 family protein 0.68 IAI47_15345 murein transglycosylase D low > 76
Dickeya dadantii 3937 0.56 DDA3937_RS05770 DUF454 family protein 0.64 DDA3937_RS16065 murein transglycosylase D low > 74
Dickeya dianthicola 67-19 0.56 HGI48_RS05820 DUF454 family protein 0.63 HGI48_RS16185 murein transglycosylase D — —
Pectobacterium carotovorum WPP14 0.56 HER17_RS15715 DUF454 family protein 0.64 HER17_RS05450 murein transglycosylase D low > 75
Serratia liquefaciens MT49 0.55 IAI46_05220 DUF454 family protein 0.63 IAI46_04130 murein transglycosylase D low > 86
Dickeya dianthicola ME23 0.54 DZA65_RS06145 DUF454 family protein 0.63 DZA65_RS17270 murein transglycosylase D low > 75
Shewanella oneidensis MR-1 0.45 SO2011 conserved hypothetical protein (NCBI ptt file) 0.29 SO2564 transglycosylase, Slt family (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_05355 DUF454 domain-containing protein 0.31 CSW01_11400 lytic transglycosylase low > 62
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_3740 Protein of unknown function DUF454 0.34 Psyr_1760 Peptidoglycan-binding LysM:SLT:MLTD_N low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_3740 Protein of unknown function DUF454 0.34 Psyr_1760 Peptidoglycan-binding LysM:SLT:MLTD_N low > 86
Pseudomonas fluorescens SBW25 0.38 PFLU_RS21930 DUF454 domain-containing protein 0.33 PFLU_RS12905 transglycosylase SLT domain-containing protein 0.45 99
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS21930 DUF454 domain-containing protein 0.33 PFLU_RS12905 transglycosylase SLT domain-containing protein 0.21 38
Pseudomonas fluorescens FW300-N2E3 0.37 AO353_18420 hypothetical protein 0.33 AO353_23485 lytic transglycosylase low > 101
Shewanella sp. ANA-3 0.37 Shewana3_2448 hypothetical protein (RefSeq) 0.29 Shewana3_2370 MltD domain-containing protein (RefSeq) — —
Pseudomonas simiae WCS417 0.37 PS417_19960 membrane protein 0.33 PS417_12215 lytic transglycosylase low > 88
Pseudomonas putida KT2440 0.37 PP_4518 conserved protein of unknown function 0.32 PP_4145 Membrane-bound lytic murein transglycosylase D low > 96
Pseudomonas fluorescens FW300-N1B4 0.37 Pf1N1B4_3531 FIG039061: hypothetical protein related to heme utilization 0.32 Pf1N1B4_4595 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) — —
Pseudomonas stutzeri RCH2 0.36 Psest_1866 Uncharacterized protein conserved in bacteria 0.30 Psest_2070 FOG: LysM repeat low > 67
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_2647 FIG039061: hypothetical protein related to heme utilization 0.34 Pf6N2E2_586 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_04060 hypothetical protein 0.34 AO356_24475 lytic transglycosylase low > 104
Pseudomonas sp. RS175 0.35 PFR28_00786 Inner membrane protein YbaN 0.34 PFR28_01551 Membrane-bound lytic murein transglycosylase D 0.15 30
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_4425 FIG039061: hypothetical protein related to heme utilization 0.34 PfGW456L13_3341 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) low > 87
Shewanella loihica PV-4 0.35 Shew_2237 hypothetical protein (RefSeq) 0.30 Shew_2115 lytic transglycosylase, catalytic (RefSeq) low > 60
Variovorax sp. SCN45 0.27 GFF5173 Hypothetical protein DUF454 0.23 GFF1116 Membrane-bound lytic murein transglycosylase D — —
Castellaniella sp019104865 MT123 0.26 ABCV34_RS06460 YbaN family protein 0.18 ABCV34_RS10490 transglycosylase SLT domain-containing protein low > 48

Not shown: 17 genomes with orthologs for ECD_00419 only; 9 genomes with orthologs for ECD_00204 only