Conservation of cofitness between DZA65_RS13340 and DZA65_RS06510 in Dickeya dianthicola ME23

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS13340 phosphoenolpyruvate synthase 1.0 DZA65_RS06510 transcription antiterminator/RNA stability regulator CspE 0.38 19
Dickeya dianthicola 67-19 1.00 HGI48_RS12875 phosphoenolpyruvate synthase 1.00 HGI48_RS06165 transcription antiterminator/RNA stability regulator CspE — —
Dickeya dadantii 3937 0.97 DDA3937_RS12805 phosphoenolpyruvate synthase 1.00 DDA3937_RS06115 transcription antiterminator/RNA stability regulator CspE — —
Pectobacterium carotovorum WPP14 0.92 HER17_RS08885 phosphoenolpyruvate synthase 0.97 HER17_RS15290 transcription antiterminator/RNA stability regulator CspE low > 75
Serratia liquefaciens MT49 0.87 IAI46_11115 phosphoenolpyruvate synthase 0.97 IAI46_05870 transcription antiterminator/RNA stability regulator CspE low > 86
Rahnella sp. WP5 0.87 EX31_RS13935 phosphoenolpyruvate synthase 0.97 EX31_RS23030 transcription antiterminator/RNA stability regulator CspE low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF3539 Phosphoenolpyruvate synthase (EC 2.7.9.2) 0.96 GFF4536 Cold shock protein CspE — —
Enterobacter asburiae PDN3 0.86 EX28DRAFT_1704 phosphoenolpyruvate synthase (EC 2.7.9.2) 0.98 EX28DRAFT_2340 Cold shock proteins — —
Escherichia coli ECOR27 0.86 NOLOHH_17665 ppsA phosphoenolpyruvate synthase 0.97 NOLOHH_23795 cspE transcription antiterminator/RNA stability regulator CspE low > 75
Escherichia coli ECRC102 0.86 NIAGMN_00920 ppsA phosphoenolpyruvate synthase 0.97 NIAGMN_05475 cspE transcription antiterminator/RNA stability regulator CspE — —
Escherichia coli ECRC100 0.86 OKFHMN_27145 ppsA phosphoenolpyruvate synthase 0.97 OKFHMN_07420 cspE transcription antiterminator/RNA stability regulator CspE low > 80
Escherichia coli Nissle 1917 0.86 ECOLIN_RS09510 phosphoenolpyruvate synthase 0.97 ECOLIN_RS03400 transcription antiterminator/RNA stability regulator CspE — —
Escherichia coli BW25113 0.86 b1702 pps phosphoenolpyruvate synthase (NCBI) 0.97 b0623 cspE cold shock protein E (NCBI) low > 76
Escherichia coli BL21 0.86 ECD_01671 phosphoenolpyruvate synthase 0.97 ECD_00593 constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein low > 61
Escherichia coli ECRC101 0.86 MCAODC_18265 ppsA phosphoenolpyruvate synthase 0.97 MCAODC_26635 cspE transcription antiterminator/RNA stability regulator CspE low > 87
Escherichia coli ECRC99 0.86 KEDOAH_00965 ppsA phosphoenolpyruvate synthase 0.97 KEDOAH_20550 cspE transcription antiterminator/RNA stability regulator CspE — —
Escherichia coli ECRC98 0.86 JDDGAC_01720 ppsA phosphoenolpyruvate synthase 0.97 JDDGAC_11065 cspE transcription antiterminator/RNA stability regulator CspE low > 86
Escherichia coli ECRC62 0.86 BNILDI_16455 ppsA phosphoenolpyruvate synthase 0.97 BNILDI_21805 cspE transcription antiterminator/RNA stability regulator CspE low > 75
Escherichia coli ECOR38 0.86 HEPCGN_05510 ppsA phosphoenolpyruvate synthase 0.97 HEPCGN_00855 cspE transcription antiterminator/RNA stability regulator CspE low > 87
Escherichia fergusonii Becca 0.86 EFB2_02289 Phosphoenolpyruvate synthase 0.97 EFB2_03468 Cold shock-like protein CspE low > 86
Pantoea sp. MT58 0.85 IAI47_10905 phosphoenolpyruvate synthase 0.96 IAI47_14075 transcription antiterminator/RNA stability regulator CspE low > 76
Klebsiella michiganensis M5al 0.85 BWI76_RS17065 phosphoenolpyruvate synthase 0.96 BWI76_RS07980 cold-shock protein — —
Enterobacter sp. TBS_079 0.85 MPMX20_01922 Phosphoenolpyruvate synthase 0.98 MPMX20_01283 Cold shock-like protein CspE low > 85
Erwinia tracheiphila SCR3 0.84 LU632_RS11025 ppsA phosphoenolpyruvate synthase 0.98 LU632_RS16440 cspE transcription antiterminator/RNA stability regulator CspE — —
Shewanella amazonensis SB2B 0.75 Sama_2072 phosphoenolpyruvate synthase (RefSeq) 0.71 Sama_2963 cold-shock DNA-binding domain-containing protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.74 Shewana3_1736 phosphoenolpyruvate synthase (RefSeq) 0.64 Shewana3_2569 cold-shock DNA-binding protein family protein (RefSeq) — —
Alteromonas macleodii MIT1002 0.74 MIT1002_01816 Phosphoenolpyruvate synthase 0.72 MIT1002_03628 Cold shock-like protein CspG low > 70
Shewanella oneidensis MR-1 0.74 SO2644 ppsA phosphoenolpyruvate synthase (NCBI ptt file) 0.72 SO1648 cold shock domain family protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.73 Shew_1549 phosphoenolpyruvate synthase (RefSeq) 0.66 Shew_1165 cold-shock DNA-binding domain-containing protein (RefSeq) — —
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_1553 phosphoenolpyruvate synthase (EC 2.7.9.2) 0.72 B158DRAFT_1826 Cold shock proteins low > 40
Marinobacter adhaerens HP15 0.70 HP15_2229 phosphoenolpyruvate synthase 0.70 HP15_861 cold shock, CspA low > 73
Pseudomonas simiae WCS417 0.70 PS417_21020 phosphoenolpyruvate synthase 0.72 PS417_19715 cold-shock protein — —
Rhodanobacter denitrificans MT42 0.66 LRK55_RS16585 phosphoenolpyruvate synthase 0.68 LRK55_RS16740 cold-shock protein — —
Rhodanobacter denitrificans FW104-10B01 0.66 LRK54_RS16870 phosphoenolpyruvate synthase 0.68 LRK54_RS17025 cold-shock protein low > 59
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_07970 ppsA phosphoenolpyruvate synthase 0.68 OKGIIK_07815 cspC cold-shock protein — —
Lysobacter sp. OAE881 0.65 ABIE51_RS09520 phosphoenolpyruvate synthase 0.68 ABIE51_RS13800 cold-shock protein low > 62
Dechlorosoma suillum PS 0.65 Dsui_2677 phosphoenolpyruvate synthase 0.68 Dsui_0007 cold shock protein — —
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.2412.1 Phosphoenolpyruvate synthase (EC 2.7.9.2) 0.68 Xcc-8004.3660.1 Cold shock protein CspD low > 74
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS07250 phosphoenolpyruvate synthase 0.68 ABZR86_RS07090 cold-shock protein — —
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS11790 phosphoenolpyruvate synthase 0.66 RR42_RS17115 cold-shock protein — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.50 ABZR88_RS11705 phosphoenolpyruvate synthase 0.45 ABZR88_RS15100 cold-shock protein low > 71

Not shown: 32 genomes with orthologs for DZA65_RS13340 only; 15 genomes with orthologs for DZA65_RS06510 only