| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_09640 | | C4-dicarboxylate ABC transporter permease | 1.0 | CSW01_14340 | | S9 family peptidase | 0.53 | 4 |
| Pseudomonas sp. RS175 | 0.57 | PFR28_00121 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.20 | PFR28_00723 | | Dipeptidyl aminopeptidase BI | low | > 88 |
| Shewanella oneidensis MR-1 | 0.56 | SO3136 | dctM | C4-dicarboxylate transport protein (NCBI ptt file) | 0.19 | SO0144 | ptrB | protease II (NCBI ptt file) | low | > 76 |
| Pseudomonas sp. DMC3 | 0.56 | GFF1144 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.20 | GFF2321 | | Protease 2 | low | > 89 |
| Shewanella sp. ANA-3 | 0.55 | Shewana3_1414 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | 0.18 | Shewana3_0135 | | oligopeptidase B (RefSeq) | low | > 73 |
| Pseudomonas aeruginosa MRSN321 | 0.54 | DY961_RS11695 | dctM;inference=COORDINATES | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.20 | DY961_RS18855 | | S9 family peptidase | low | > 100 |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_4270 | | TRAP transporter, DctM subunit | 0.19 | Psest_2655 | | Protease II | low | > 67 |
| Pseudomonas aeruginosa PA14 | 0.54 | IKLFDK_27640 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.20 | IKLFDK_06190 | | peptidase S9 | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.54 | DQ20_RS50405 | dctM;inference=COORDINATES | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.20 | DQ20_RS52995 | | S9 family peptidase | low | > 101 |
| Shewanella amazonensis SB2B | 0.53 | Sama_2211 | | alpha-ketoglutarate TRAP transporter, large permease component (from data) | 0.20 | Sama_0144 | | oligopeptidase B (RefSeq) | low | > 62 |
| Pseudomonas segetis P6 | 0.53 | MPMX49_04381 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.20 | MPMX49_02979 | | Protease 2 | low | > 75 |
| Shewanella loihica PV-4 | 0.52 | Shew_1444 | | dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) | 0.19 | Shew_0039 | | oligopeptidase B (RefSeq) | low | > 60 |
| Pseudomonas fluorescens SBW25-INTG | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | 0.19 | PFLU_RS07530 | | S9 family peptidase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | 0.19 | PFLU_RS07530 | | S9 family peptidase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.50 | PS417_14900 | | C4-dicarboxylate ABC transporter permease | 0.19 | PS417_07445 | | peptidase S9 | low | > 88 |
| Rhodopseudomonas palustris CGA009 | 0.44 | TX73_010560 | | TRAP transporter large permease subunit | 0.18 | TX73_008065 | | S9 family peptidase | low | > 86 |
| Enterobacter sp. TBS_079 | 0.33 | MPMX20_04347 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.22 | MPMX20_02752 | | Protease 2 | low | > 85 |
| Pantoea sp. MT58 | 0.33 | IAI47_03220 | | TRAP transporter large permease | 0.21 | IAI47_08515 | | prolyl oligopeptidase family serine peptidase | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.33 | PagCFBP13505_RS16475 | | TRAP transporter large permease | 0.20 | PagCFBP13505_RS02395 | | oligopeptidase B | low | > 74 |
| Rahnella sp. WP5 | 0.32 | EX31_RS08020 | | TRAP transporter large permease | 0.21 | EX31_RS24750 | | prolyl oligopeptidase family serine peptidase | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.32 | HER17_RS19685 | | TRAP transporter large permease | 0.21 | HER17_RS11765 | | prolyl oligopeptidase family serine peptidase | low | > 75 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.31 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | 0.20 | Psyr_1574 | | oligopeptidase B, Serine peptidase, MEROPS family S09A | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.31 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | 0.20 | Psyr_1574 | | oligopeptidase B, Serine peptidase, MEROPS family S09A | low | > 86 |
| Cellulophaga baltica 18 | 0.31 | M666_RS19730 | | TRAP transporter large permease subunit | 0.18 | M666_RS13870 | | oligopeptidase B | low | > 67 |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_23045 | | hypothetical protein | 0.20 | AO356_04360 | | peptidase S9 | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_485 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.20 | Pf6N2E2_2713 | | Protease II (EC 3.4.21.83) | low | > 103 |
| Pseudomonas lactucae CFBP13502 | 0.31 | GEMAOFIL_03770 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.20 | GEMAOFIL_01622 | | Protease 2 | — | — |
| Pseudomonas sp. BP01 | 0.31 | JOY50_RS02045 | | TRAP transporter large permease | 0.20 | JOY50_RS01480 | | S9 family peptidase | low | > 84 |
| Pseudomonas putida KT2440 | 0.30 | PP_1167 | | D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) | 0.20 | PP_4583 | | putative Peptidase | low | > 96 |
| Alteromonas macleodii MIT1002 | 0.29 | MIT1002_02428 | | Neu5Ac permease | 0.19 | MIT1002_02578 | | Protease 2 | low | > 70 |
| Xanthobacter sp. DMC5 | 0.28 | GFF2559 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.18 | GFF4139 | | Dipeptidyl aminopeptidase BI | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.25 | Echvi_3627 | | TRAP transporter, DctM subunit | 0.20 | Echvi_2305 | | Protease II | low | > 79 |
| Lysobacter sp. OAE881 | 0.24 | ABIE51_RS02840 | | TRAP transporter large permease | 0.20 | ABIE51_RS03010 | | S9 family peptidase | low | > 62 |
Not shown: 16 genomes with orthologs for CSW01_09640 only; 38 genomes with orthologs for CSW01_14340 only