| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_11705 | | MFS transporter | 1.0 | CSW01_14325 | | peptidase | 0.62 | 10 |
| Shewanella oneidensis MR-1 | 0.27 | SO3814 | | ampG protein, putative (NCBI ptt file) | 0.37 | SO3748 | | LysM domain protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.27 | Shewana3_0783 | | major facilitator transporter (RefSeq) | 0.38 | Shewana3_0844 | | ErfK/YbiS/YcfS/YnhG family protein (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.27 | Sama_2556 | | AmpG protein, putative (RefSeq) | 0.40 | Sama_0726 | | ErfK/YbiS/YcfS/YnhG (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.26 | Shew_2892 | | major facilitator transporter (RefSeq) | 0.50 | Shew_1006 | | ErfK/YbiS/YcfS/YnhG family protein (RefSeq) | low | > 60 |
| Dickeya dadantii 3937 | 0.21 | DDA3937_RS05620 | | muropeptide MFS transporter AmpG | 0.42 | DDA3937_RS12750 | | L,D-transpeptidase family protein | low | > 74 |
| Pseudomonas syringae pv. syringae B728a | 0.20 | Psyr_4078 | | AmpG-related permease | 0.36 | Psyr_2070 | | ErfK/YbiS/YcfS/YnhG | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.20 | Psyr_4078 | | AmpG-related permease | 0.36 | Psyr_2070 | | ErfK/YbiS/YcfS/YnhG | low | > 86 |
| Pseudomonas sp. BP01 | 0.20 | JOY50_RS15020 | | AmpG family muropeptide MFS transporter | 0.36 | JOY50_RS25815 | | L,D-transpeptidase family protein | low | > 84 |
| Dickeya dianthicola 67-19 | 0.20 | HGI48_RS05665 | | muropeptide MFS transporter AmpG | 0.42 | HGI48_RS12815 | | L,D-transpeptidase family protein | low | > 71 |
| Serratia liquefaciens MT49 | 0.20 | IAI46_04990 | | muropeptide MFS transporter AmpG | 0.44 | IAI46_11175 | | L,D-transpeptidase family protein | low | > 87 |
| Rahnella sp. WP5 | 0.20 | EX31_RS22225 | | muropeptide MFS transporter AmpG | 0.45 | EX31_RS13880 | | L,D-transpeptidase family protein | low | > 89 |
| Escherichia coli ECRC62 | 0.20 | BNILDI_22705 | ampG | muropeptide MFS transporter AmpG | 0.44 | BNILDI_19165 | ldtC | L,D-transpeptidase LdtC | low | > 75 |
| Escherichia coli Nissle 1917 | 0.20 | ECOLIN_RS02600 | | muropeptide MFS transporter AmpG | 0.44 | ECOLIN_RS06420 | | L,D-transpeptidase LdtC | low | > 55 |
| Escherichia coli ECOR27 | 0.20 | NOLOHH_01290 | ampG | muropeptide MFS transporter AmpG | 0.44 | NOLOHH_21000 | ldtC | L,D-transpeptidase LdtC | low | > 76 |
| Escherichia coli BL21 | 0.20 | ECD_00384 | | muropeptide transporter | 0.44 | ECD_01109 | | L,D-transpeptidase linking Lpp to murein | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.20 | OHPLBJKB_03240 | | Protein AmpG | 0.44 | OHPLBJKB_02553 | | putative L,D-transpeptidase YcfS | low | > 74 |
| Escherichia coli BW25113 | 0.20 | b0433 | ampG | muropeptide transporter (NCBI) | 0.44 | b1113 | ycfS | hypothetical protein (NCBI) | low | > 76 |
| Escherichia coli ECRC100 | 0.20 | OKFHMN_08355 | ampG | muropeptide MFS transporter AmpG | 0.44 | OKFHMN_03475 | ldtC | L,D-transpeptidase LdtC | low | > 79 |
| Pseudomonas putida KT2440 | 0.20 | PP_1355 | | Muropeptide permease AmpG | 0.36 | PP_2320 | | conserved exported protein of unknown function | low | > 96 |
| Escherichia coli ECRC99 | 0.20 | KEDOAH_19610 | ampG | muropeptide MFS transporter AmpG | 0.44 | KEDOAH_24280 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli ECRC98 | 0.20 | JDDGAC_12010 | ampG | muropeptide MFS transporter AmpG | 0.44 | JDDGAC_07135 | ldtC | L,D-transpeptidase LdtC | low | > 87 |
| Escherichia coli ECRC101 | 0.20 | MCAODC_27580 | ampG | muropeptide MFS transporter AmpG | 0.44 | MCAODC_22835 | ldtC | L,D-transpeptidase LdtC | low | > 87 |
| Escherichia coli ECRC102 | 0.20 | NIAGMN_06410 | ampG | muropeptide MFS transporter AmpG | 0.44 | NIAGMN_24355 | ldtC | L,D-transpeptidase LdtC | low | > 80 |
| Escherichia coli ECOR38 | 0.20 | HEPCGN_06970 | ampG | muropeptide MFS transporter AmpG | 0.44 | HEPCGN_24010 | ldtC | L,D-transpeptidase LdtC | low | > 88 |
| Escherichia fergusonii Becca | 0.20 | EFB2_03624 | | Anhydromuropeptide permease | 0.44 | EFB2_02862 | | putative L,D-transpeptidase YcfS | low | > 86 |
| Enterobacter sp. TBS_079 | 0.20 | MPMX20_01024 | | Anhydromuropeptide permease | 0.45 | MPMX20_01794 | | putative L,D-transpeptidase YcfS | low | > 85 |
| Pseudomonas sp. DMC3 | 0.20 | GFF2134 | | hypothetical protein | 0.35 | GFF4626 | | putative L,D-transpeptidase YbiS | low | > 89 |
| Pseudomonas fluorescens SBW25-INTG | 0.20 | PFLU_RS24475 | | AmpG family muropeptide MFS transporter | 0.35 | PFLU_RS08365 | | L,D-transpeptidase family protein | 0.31 | 77 |
| Dickeya dianthicola ME23 | 0.20 | DZA65_RS05990 | | muropeptide MFS transporter AmpG | 0.42 | DZA65_RS13280 | | L,D-transpeptidase family protein | low | > 75 |
| Pseudomonas fluorescens SBW25 | 0.20 | PFLU_RS24475 | | AmpG family muropeptide MFS transporter | 0.35 | PFLU_RS08365 | | L,D-transpeptidase family protein | low | > 109 |
| Enterobacter asburiae PDN3 | 0.19 | EX28DRAFT_2538 | | AmpG-like permease | 0.44 | EX28DRAFT_1817 | | Uncharacterized protein conserved in bacteria | low | > 76 |
| Pseudomonas orientalis W4I3 | 0.19 | QF045_RS25005 | | AmpG family muropeptide MFS transporter | 0.34 | QF045_RS11135 | | L,D-transpeptidase family protein | low | > 93 |
| Pseudomonas sp. SVBP6 | 0.19 | COO64_RS11990 | | AmpG family muropeptide MFS transporter | 0.35 | COO64_RS09790 | | L,D-transpeptidase family protein | low | > 93 |
| Pectobacterium carotovorum WPP14 | 0.19 | HER17_RS15870 | | muropeptide MFS transporter AmpG | 0.43 | HER17_RS08950 | | L,D-transpeptidase family protein | low | > 75 |
| Pseudomonas fluorescens GW456-L13 | 0.19 | PfGW456L13_4645 | | AmpG permease | 0.36 | PfGW456L13_2221 | | ErfK/YbiS/YcfS/YnhG family protein | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.19 | Pf1N1B4_3168 | | AmpG permease | 0.36 | Pf1N1B4_292 | | ErfK/YbiS/YcfS/YnhG family protein | low | > 87 |
| Pantoea sp. MT58 | 0.19 | IAI47_14675 | | muropeptide MFS transporter AmpG | 0.43 | IAI47_10850 | | L,D-transpeptidase family protein | low | > 76 |
| Pseudomonas simiae WCS417 | 0.19 | PS417_22815 | | permease | 0.35 | PS417_08415 | | hypothetical protein | low | > 88 |
| Pantoea agglomerans CFBP13505 P0401 | 0.19 | PagCFBP13505_RS10520 | | muropeptide MFS transporter AmpG | 0.43 | PagCFBP13505_RS17740 | | L,D-transpeptidase | low | > 74 |
| Klebsiella michiganensis M5al | 0.19 | BWI76_RS06500 | | muropeptide transporter AmpG | 0.45 | BWI76_RS11200 | | transpeptidase | low | > 92 |
| Klebsiella pneumoniae MKP103 | 0.19 | KDGMDA_14585 | | muropeptide MFS transporter AmpG | 0.42 | KDGMDA_24140 | | murein L D-transpeptidase | low | > 95 |
| Pseudomonas sp. RS175 | 0.19 | PFR28_00495 | | hypothetical protein | 0.36 | PFR28_00960 | | hypothetical protein | low | > 88 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.19 | GFF4348 | | AmpG permease | 0.46 | GFF3396 | | L,D-transpeptidase YcfS | low | > 78 |
| Pseudomonas lactucae CFBP13502 | 0.19 | GEMAOFIL_04714 | | hypothetical protein | 0.35 | GEMAOFIL_01816 | | hypothetical protein | low | > 96 |
| Pseudomonas fluorescens FW300-N2C3 | 0.19 | AO356_05555 | | AmpG family muropeptide MFS transporter | 0.36 | AO356_03215 | | hypothetical protein | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.19 | AO353_16925 | | AmpG family muropeptide MFS transporter | 0.36 | AO353_19015 | | hypothetical protein | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.18 | Pf6N2E2_2971 | | AmpG permease | 0.36 | Pf6N2E2_2474 | | ErfK/YbiS/YcfS/YnhG family protein | low | > 103 |
| Erwinia amylovora T8 | 0.17 | OLJFJH_18000 | | muropeptide MFS transporter AmpG | 0.34 | OLJFJH_16675 | | L D-transpeptidase | 0.71 | 14 |
| Pseudomonas sp. S08-1 | 0.14 | OH686_08200 | | AmpG permease | 0.36 | OH686_01780 | | L,D-transpeptidase | low | > 80 |
| Pseudomonas segetis P6 | 0.12 | MPMX49_03781 | | hypothetical protein | 0.35 | MPMX49_02652 | | putative L,D-transpeptidase YbiS | low | > 75 |
Not shown: 41 genomes with orthologs for CSW01_11705 only; 4 genomes with orthologs for CSW01_14325 only