Conservation of cofitness between CSW01_03915 and CSW01_12555 in Vibrio cholerae E7946 ATCC 55056

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03915 Fe-S assembly protein IscX 1.0 CSW01_12555 phosphoglycerate dehydrogenase 0.38 15
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.76 GFF2429 Believed to be involved in assembly of Fe-S clusters 0.77 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Klebsiella michiganensis M5al 0.74 BWI76_RS21130 Fe-S assembly protein IscX 0.77 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase low > 92
Serratia liquefaciens MT49 0.73 IAI46_19325 Fe-S cluster assembly protein IscX 0.78 IAI46_20900 phosphoglycerate dehydrogenase low > 87
Escherichia coli Nissle 1917 0.73 ECOLIN_RS14335 Fe-S cluster assembly protein IscX 0.76 ECOLIN_RS16210 phosphoglycerate dehydrogenase — —
Klebsiella pneumoniae MKP103 0.73 KDGMDA_28255 ISC system 2Fe-2S type ferredoxin 0.77 KDGMDA_04420 phosphoglycerate dehydrogenase low > 95
Escherichia fergusonii Becca 0.73 EFB2_01366 Protein IscX 0.75 EFB2_00990 D-3-phosphoglycerate dehydrogenase low > 86
Escherichia coli BW25113 0.73 b2524 yfhJ hypothetical protein (NCBI) 0.76 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) — —
Escherichia coli ECOR27 0.73 NOLOHH_13320 iscX Fe-S cluster assembly protein IscX 0.76 NOLOHH_11370 serA phosphoglycerate dehydrogenase low > 76
Escherichia coli ECRC102 0.73 NIAGMN_19420 iscX Fe-S cluster assembly protein IscX 0.76 NIAGMN_17225 serA phosphoglycerate dehydrogenase low > 80
Escherichia coli BL21 0.73 ECD_02416 Fe(2+) donor and activity modulator for cysteine desulfurase 0.76 ECD_02744 D-3-phosphoglycerate dehydrogenase low > 61
Escherichia coli ECRC100 0.73 OKFHMN_21650 iscX Fe-S cluster assembly protein IscX 0.76 OKFHMN_19460 serA phosphoglycerate dehydrogenase low > 79
Escherichia coli ECRC101 0.73 MCAODC_12180 iscX Fe-S cluster assembly protein IscX 0.76 MCAODC_09980 serA phosphoglycerate dehydrogenase — —
Escherichia coli ECRC99 0.73 KEDOAH_06570 iscX Fe-S cluster assembly protein IscX 0.76 KEDOAH_08680 serA phosphoglycerate dehydrogenase — —
Escherichia coli ECOR38 0.73 HEPCGN_20790 iscX Fe-S cluster assembly protein IscX 0.76 HEPCGN_18760 serA phosphoglycerate dehydrogenase low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_01185 Protein IscX 0.76 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase low > 74
Escherichia coli ECRC98 0.73 JDDGAC_25325 iscX Fe-S cluster assembly protein IscX 0.76 JDDGAC_23100 serA phosphoglycerate dehydrogenase — —
Escherichia coli ECRC62 0.73 BNILDI_12120 iscX Fe-S cluster assembly protein IscX 0.75 BNILDI_09905 serA phosphoglycerate dehydrogenase low > 75
Dickeya dadantii 3937 0.73 DDA3937_RS15515 Fe-S cluster assembly protein IscX 0.75 DDA3937_RS18480 phosphoglycerate dehydrogenase — —
Enterobacter asburiae PDN3 0.73 EX28DRAFT_0116 FeS assembly protein IscX 0.77 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Dickeya dianthicola ME23 0.72 DZA65_RS16690 Fe-S cluster assembly protein IscX 0.75 DZA65_RS19540 phosphoglycerate dehydrogenase low > 75
Dickeya dianthicola 67-19 0.70 HGI48_RS15615 Fe-S cluster assembly protein IscX 0.75 HGI48_RS18400 phosphoglycerate dehydrogenase low > 71
Pectobacterium carotovorum WPP14 0.69 HER17_RS06045 Fe-S cluster assembly protein IscX 0.76 HER17_RS02725 phosphoglycerate dehydrogenase low > 75
Cupriavidus basilensis FW507-4G11 0.68 RR42_RS06060 hypothetical protein 0.49 RR42_RS27010 D-3-phosphoglycerate dehydrogenase — —
Shewanella loihica PV-4 0.65 Shew_2311 hypothetical protein (RefSeq) 0.74 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) — —
Pseudomonas stutzeri RCH2 0.62 Psest_1257 FeS assembly protein IscX 0.66 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Enterobacter sp. TBS_079 0.62 MPMX20_03405 Protein IscX 0.77 MPMX20_03771 D-3-phosphoglycerate dehydrogenase low > 85
Kangiella aquimarina DSM 16071 0.62 B158DRAFT_1465 FeS assembly protein IscX 0.66 B158DRAFT_0518 Phosphoglycerate dehydrogenase and related dehydrogenases low > 40
Shewanella oneidensis MR-1 0.62 SO2271 conserved hypothetical protein (NCBI ptt file) 0.72 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) — —
Acinetobacter baumannii LAC-4 0.62 RR41_RS16470 Fe-S cluster assembly protein IscX 0.63 RR41_RS01765 phosphoglycerate dehydrogenase low > 55
Pseudomonas sp. S08-1 0.60 OH686_17505 FeS assembly protein IscX 0.65 OH686_11280 D-3-phosphoglycerate dehydrogenase low > 80
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_15865 Fe-S assembly protein IscX 0.66 AO353_08510 3-phosphoglycerate dehydrogenase — —
Shewanella sp. ANA-3 0.59 Shewana3_2273 hypothetical protein (RefSeq) 0.73 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) — —
Pseudomonas sp. BP01 0.58 JOY50_RS22790 iscX Fe-S cluster assembly protein IscX 0.65 JOY50_RS20615 serA phosphoglycerate dehydrogenase low > 84
Pseudomonas putida KT2440 0.58 PP_0848 donor of Fe2+ and regulator of cysteine desulfurase activity 0.65 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase low > 96
Acinetobacter radioresistens SK82 0.58 MPMX26_00424 Protein IscX 0.64 MPMX26_02773 D-3-phosphoglycerate dehydrogenase low > 36
Pseudomonas sp. RS175 0.57 PFR28_00292 Protein IscX 0.65 PFR28_04842 D-3-phosphoglycerate dehydrogenase low > 88
Pseudomonas sp. SVBP6 0.57 COO64_RS03925 iscX Fe-S cluster assembly protein IscX 0.65 COO64_RS12640 serA phosphoglycerate dehydrogenase low > 93
Pseudomonas segetis P6 0.57 ACVTMO_RS07495 iscX Fe-S cluster assembly protein IscX 0.64 ACVTMO_RS02840 serA phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_859 Believed to be involved in assembly of Fe-S clusters 0.66 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas aeruginosa PA14 0.56 IKLFDK_19610 Fe-S cluster assembly protein IscX 0.64 IKLFDK_23865 phosphoglycerate dehydrogenase — —
Pseudomonas aeruginosa PUPa3 0.56 DQ20_RS43220 iscX;go_function=iron Fe-S cluster assembly protein IscX 0.64 DQ20_RS37755 serA;go_function=oxidoreductase phosphoglycerate dehydrogenase — —
Pseudomonas aeruginosa MRSN321 0.56 DY961_RS13880 iscX;go_function=iron Fe-S cluster assembly protein IscX 0.64 DY961_RS21535 serA;go_function=oxidoreductase phosphoglycerate dehydrogenase low > 100
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_4867 Believed to be involved in assembly of Fe-S clusters 0.66 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_06615 FeS assembly protein IscX 0.65 AO356_10300 3-phosphoglycerate dehydrogenase low > 104
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_1243 Protein of unknown function DUF528 0.67 Psyr_4852 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_1243 Protein of unknown function DUF528 0.67 Psyr_4852 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas orientalis W4I3 0.47 QF045_RS25390 Fe-S cluster assembly protein IscX 0.66 QF045_RS01430 phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_3183 Believed to be involved in assembly of Fe-S clusters 0.65 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.22 62
Pseudomonas sp. DMC3 0.45 GFF4344 Protein IscX 0.66 GFF274 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas simiae WCS417 0.44 PS417_23170 FeS assembly protein IscX 0.66 PS417_27040 3-phosphoglycerate dehydrogenase low > 88
Pseudomonas fluorescens SBW25 0.43 PFLU_RS24825 Fe-S cluster assembly protein IscX 0.66 PFLU_RS28695 phosphoglycerate dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS24825 Fe-S cluster assembly protein IscX 0.66 PFLU_RS28695 phosphoglycerate dehydrogenase low > 109

Not shown: 13 genomes with orthologs for CSW01_03915 only; 29 genomes with orthologs for CSW01_12555 only