Conservation of cofitness between CSW01_03335 and CSW01_10080 in Vibrio cholerae E7946 ATCC 55056

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03335 ribosome assembly RNA-binding protein YhbY 1.0 CSW01_10080 4-amino-4-deoxychorismate lyase 0.50 13
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.82 GFF2921 FIG004454: RNA binding protein 0.29 GFF3378 Aminodeoxychorismate lyase (EC 4.1.3.38) low > 78
Pantoea agglomerans CFBP13505 P0401 0.82 PagCFBP13516_RS17295 yhbY ribosome assembly RNA-binding protein YhbY 0.28 PagCFBP13516_RS12115 pabC aminodeoxychorismate lyase low > 80
Pantoea sp. MT58 0.81 IAI47_17075 ribosome assembly RNA-binding protein YhbY 0.30 IAI47_12055 aminodeoxychorismate lyase low > 76
Escherichia coli BL21 0.81 ECD_03045 RNA binding protein 0.33 ECD_01092 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex — —
Escherichia coli BW25113 0.81 b3180 yhbY predicted RNA-binding protein (NCBI) 0.33 b1096 pabC 4-amino-4-deoxychorismate lyase (NCBI) low > 76
Escherichia coli ECRC62 0.81 BNILDI_01685 yhbY ribosome assembly RNA-binding protein YhbY 0.33 BNILDI_19250 pabC aminodeoxychorismate lyase low > 75
Escherichia fergusonii Becca 0.81 EFB2_00643 RNA-binding protein YhbY 0.33 EFB2_02879 Aminodeoxychorismate lyase low > 86
Escherichia coli ECRC100 0.81 OKFHMN_18050 yhbY ribosome assembly RNA-binding protein YhbY 0.33 OKFHMN_03560 pabC aminodeoxychorismate lyase low > 79
Escherichia coli ECRC99 0.81 KEDOAH_10100 yhbY ribosome assembly RNA-binding protein YhbY 0.33 KEDOAH_24195 pabC aminodeoxychorismate lyase — —
Escherichia coli ECOR38 0.81 HEPCGN_16925 yhbY ribosome assembly RNA-binding protein YhbY 0.32 HEPCGN_23920 pabC aminodeoxychorismate lyase low > 88
Escherichia coli ECOR27 0.81 NOLOHH_09850 yhbY ribosome assembly RNA-binding protein YhbY 0.33 NOLOHH_21090 pabC aminodeoxychorismate lyase low > 75
Escherichia coli ECRC102 0.81 NIAGMN_15810 yhbY ribosome assembly RNA-binding protein YhbY 0.33 NIAGMN_24270 pabC aminodeoxychorismate lyase — —
Escherichia coli ECRC101 0.81 MCAODC_08570 yhbY ribosome assembly RNA-binding protein YhbY 0.33 MCAODC_22920 pabC aminodeoxychorismate lyase low > 87
Escherichia coli ECRC98 0.81 JDDGAC_21675 yhbY ribosome assembly RNA-binding protein YhbY 0.33 JDDGAC_07220 pabC aminodeoxychorismate lyase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_00520 RNA-binding protein YhbY 0.33 OHPLBJKB_02570 Aminodeoxychorismate lyase low > 74
Escherichia coli Nissle 1917 0.81 ECOLIN_RS18315 ribosome assembly RNA-binding protein YhbY 0.33 ECOLIN_RS06330 aminodeoxychorismate lyase low > 55
Enterobacter asburiae PDN3 0.80 EX28DRAFT_3231 putative RNA-binding protein, YhbY family 0.33 EX28DRAFT_1833 aminodeoxychorismate lyase low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_04084 RNA-binding protein YhbY 0.28 MPMX20_01776 Aminodeoxychorismate lyase low > 85
Klebsiella michiganensis M5al 0.80 BWI76_RS25155 RNA-binding protein 0.32 BWI76_RS11105 aminodeoxychorismate lyase — —
Dickeya dianthicola 67-19 0.80 HGI48_RS03190 ribosome assembly RNA-binding protein YhbY 0.33 HGI48_RS13170 aminodeoxychorismate lyase low > 71
Klebsiella pneumoniae MKP103 0.80 KDGMDA_05970 ribosome assembly RNA-binding protein YhbY 0.31 KDGMDA_18710 aminodeoxychorismate lyase low > 94
Dickeya dadantii 3937 0.80 DDA3937_RS03020 ribosome assembly RNA-binding protein YhbY 0.32 DDA3937_RS23255 aminodeoxychorismate lyase low > 74
Dickeya dianthicola ME23 0.80 DZA65_RS03185 ribosome assembly RNA-binding protein YhbY 0.32 DZA65_RS13640 aminodeoxychorismate lyase low > 75
Serratia liquefaciens MT49 0.80 IAI46_01885 ribosome assembly RNA-binding protein YhbY 0.33 IAI46_09805 aminodeoxychorismate lyase low > 87
Klebsiella pneumoniae MRSN742743 0.79 KFA93_RS13225 yhbY;inference=COORDINATES ribosome assembly RNA-binding protein YhbY 0.31 KFA93_RS00180 pabC;go_function=4-amino-4-deoxychorismate aminodeoxychorismate lyase low > 82
Pectobacterium carotovorum WPP14 0.78 HER17_RS18325 ribosome assembly RNA-binding protein YhbY 0.33 HER17_RS08665 aminodeoxychorismate lyase — —
Erwinia amylovora T8 0.77 OLJFJH_07190 ribosome assembly RNA-binding protein YhbY 0.32 OLJFJH_15515 aminodeoxychorismate lyase low > 58
Erwinia tracheiphila HP pepo 2.2 0.77 IJEDHG_13870 yhbY ribosome assembly RNA-binding protein YhbY 0.33 IJEDHG_00665 pabC aminodeoxychorismate lyase low > 61
Shewanella oneidensis MR-1 0.76 SO1195 conserved hypothetical protein TIGR00253 (NCBI ptt file) 0.29 SO2615 pabC 4-amino-4-deoxychorismate lyase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.76 Shewana3_1021 hypothetical protein (RefSeq) 0.28 Shewana3_1764 aminodeoxychorismate lyase apoprotein (RefSeq) — —
Shewanella loihica PV-4 0.76 Shew_2836 hypothetical protein (RefSeq) 0.26 Shew_1577 aminotransferase, class IV (RefSeq) — —
Erwinia tracheiphila SCR3 0.76 LU632_RS21115 yhbY ribosome assembly RNA-binding protein YhbY 0.33 LU632_RS14805 pabC aminodeoxychorismate lyase low > 73
Rahnella sp. WP5 0.73 EX31_RS08590 ribosome assembly RNA-binding protein YhbY 0.30 EX31_RS24450 aminodeoxychorismate lyase low > 89
Alteromonas macleodii MIT1002 0.69 MIT1002_01863 RNA-binding protein 0.29 MIT1002_01736 Aminodeoxychorismate lyase low > 70
Methylophilus sp. DMC18 0.50 GFF315 RNA-binding protein 0.29 GFF627 Aminodeoxychorismate lyase low > 43
Rhodanobacter sp000427505 FW510-R12 0.47 LRK53_RS12245 ribosome assembly RNA-binding protein YhbY 0.28 LRK53_RS08905 aminodeoxychorismate lyase low > 59
Acinetobacter radioresistens SK82 0.45 MPMX26_00770 RNA-binding protein 0.28 MPMX26_02165 Aminodeoxychorismate lyase low > 36
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_08090 yhbY ribosome assembly RNA-binding protein YhbY 0.25 OKGIIK_05735 pabC aminodeoxychorismate lyase — —
Rhodanobacter denitrificans MT42 0.45 LRK55_RS16400 ribosome assembly RNA-binding protein YhbY 0.26 LRK55_RS00940 aminodeoxychorismate lyase low > 63
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS16675 ribosome assembly RNA-binding protein YhbY 0.26 LRK54_RS01165 aminodeoxychorismate lyase 0.24 27
Pseudomonas sp. S08-1 0.45 OH686_17095 RNA-binding protein YhbY 0.28 OH686_22155 aminodeoxychorismate lyase low > 80
Pseudomonas segetis P6 0.43 ACVTMO_RS05900 yhbY ribosome assembly RNA-binding protein YhbY 0.28 ACVTMO_RS10325 pabC aminodeoxychorismate lyase low > 75
Pseudomonas aeruginosa PUPa3 0.42 DQ20_RS52515 yhbY;go_component=cytoplasm|0005737||IEA;go_function=RNA ribosome assembly RNA-binding protein YhbY 0.27 DQ20_RS33430 pabC;go_function=4-amino-4-deoxychorismate aminodeoxychorismate lyase low > 101
Pseudomonas aeruginosa MRSN321 0.42 DY961_RS09520 yhbY;go_component=cytoplasm|0005737||IEA;go_function=RNA ribosome assembly RNA-binding protein YhbY 0.27 DY961_RS02155 pabC;go_function=4-amino-4-deoxychorismate aminodeoxychorismate lyase low > 99
Pseudomonas aeruginosa PA14 0.42 IKLFDK_29830 ribosome assembly RNA-binding protein YhbY 0.28 IKLFDK_15080 aminodeoxychorismate lyase — —
Pseudomonas lactucae CFBP13502 0.42 GEMAOFIL_04955 RNA-binding protein 0.25 GEMAOFIL_04429 Aminodeoxychorismate lyase — —
Pseudomonas simiae WCS417 0.42 PS417_24025 RNA-binding protein 0.25 PS417_21425 4-amino-4-deoxychorismate lyase — —
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS25865 YhbY family RNA-binding protein 0.26 PFLU_RS23040 aminodeoxychorismate lyase low > 109
Pseudomonas fluorescens SBW25 0.42 PFLU_RS25865 YhbY family RNA-binding protein 0.26 PFLU_RS23040 aminodeoxychorismate lyase low > 109
Pseudomonas orientalis W4I3 0.41 QF045_RS26280 YhbY family RNA-binding protein 0.26 QF045_RS23505 aminodeoxychorismate lyase low > 93
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_3361 FIG004454: RNA binding protein 0.25 Pf6N2E2_5955 Aminodeoxychorismate lyase (EC 4.1.3.38) — —
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_07465 RNA-binding protein 0.26 AO356_20180 4-amino-4-deoxychorismate lyase — —
Pseudomonas stutzeri RCH2 0.40 Psest_0971 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein 0.27 Psest_1691 aminodeoxychorismate lyase — —
Pseudomonas sp. RS175 0.40 PFR28_00080 RNA-binding protein YhbY 0.26 PFR28_03007 Aminodeoxychorismate lyase — —
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_5096 FIG004454: RNA binding protein 0.26 PfGW456L13_2108 Aminodeoxychorismate lyase (EC 4.1.3.38) low > 87
Pseudomonas protegens RBAN4 0.39 FABNJH_04340 yhbY RNA-binding protein YhbY 0.25 FABNJH_09320 pabC aminodeoxychorismate lyase — —
Pseudomonas sp. DMC3 0.39 GFF4980 RNA-binding protein 0.26 GFF4754 Aminodeoxychorismate lyase low > 89

Not shown: 16 genomes with orthologs for CSW01_03335 only; 0 genomes with orthologs for CSW01_10080 only