Conservation of cofitness between CSW01_07550 and CSW01_09250 in Vibrio cholerae E7946 ATCC 55056

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07550 GntR family transcriptional regulator 1.0 CSW01_09250 crossover junction endodeoxyribonuclease RuvC 0.48 4
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_535 FIG00953341: hypothetical protein 0.57 Pf1N1B4_639 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.51 Psyr_3786 RNA binding S1 0.56 Psyr_1408 Holliday junction endonuclease RuvC low > 86
Pseudomonas sp. DMC3 0.51 GFF2362 Conserved virulence factor B 0.57 GFF5186 Crossover junction endodeoxyribonuclease RuvC 0.51 89
Pseudomonas syringae pv. syringae B728a 0.51 Psyr_3786 RNA binding S1 0.56 Psyr_1408 Holliday junction endonuclease RuvC low > 86
Pseudomonas lactucae CFBP13502 0.51 GEMAOFIL_04239 Conserved virulence factor B 0.56 GEMAOFIL_04643 Crossover junction endodeoxyribonuclease RuvC low > 96
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_18370 GntR family transcriptional regulator 0.57 AO353_03590 crossover junction endodeoxyribonuclease RuvC low > 101
Pseudomonas fluorescens SBW25 0.51 PFLU_RS22165 GntR family transcriptional regulator 0.57 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC low > 109
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_2663 FIG00953341: hypothetical protein 0.57 Pf6N2E2_5535 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_04130 GntR family transcriptional regulator 0.57 AO356_18015 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS22165 GntR family transcriptional regulator 0.57 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC low > 109
Shewanella amazonensis SB2B 0.51 Sama_1966 hypothetical protein (RefSeq) 0.63 Sama_1841 ruvC Holliday junction resolvase (RefSeq) — —
Pseudomonas simiae WCS417 0.50 PS417_20225 GntR family transcriptional regulator 0.56 PS417_22455 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_4444 FIG00953341: hypothetical protein 0.57 PfGW456L13_1851 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) low > 87
Pseudomonas segetis P6 0.50 MPMX49_03244 Conserved virulence factor B 0.56 MPMX49_01683 Crossover junction endodeoxyribonuclease RuvC low > 75
Pseudomonas orientalis W4I3 0.50 QF045_RS22335 S1-like domain-containing RNA-binding protein 0.56 QF045_RS24620 crossover junction endodeoxyribonuclease RuvC low > 93
Pseudomonas sp. S08-1 0.50 OH686_05385 hypothetical protein 0.55 OH686_19125 crossover junction endodeoxyribonuclease RuvC low > 80
Shewanella loihica PV-4 0.50 Shew_1618 hypothetical protein (RefSeq) 0.65 Shew_2077 crossover junction endodeoxyribonuclease RuvC (RefSeq) low > 60
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS18155 S1-like domain-containing RNA-binding protein 0.34 HMPREF1078_RS13315 crossover junction endodeoxyribonuclease RuvC low > 61
Shewanella sp. ANA-3 0.50 Shewana3_1623 hypothetical protein (RefSeq) 0.67 Shewana3_1955 ruvC Holliday junction resolvase (RefSeq) — —
Pseudomonas aeruginosa MRSN321 0.50 DY961_RS06855 S1 RNA-binding domain-containing protein 0.55 DY961_RS07605 ruvC;go_function=crossover crossover junction endodeoxyribonuclease RuvC low > 100
Pseudomonas sp. RS175 0.50 PFR28_00770 Conserved virulence factor B 0.57 PFR28_03414 Crossover junction endodeoxyribonuclease RuvC low > 88
Pseudomonas aeruginosa PA14 0.50 IKLFDK_05150 GntR family transcriptional regulator 0.55 IKLFDK_04365 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas aeruginosa PUPa3 0.50 DQ20_RS45975 S1 RNA-binding domain-containing protein 0.55 DQ20_RS45185 ruvC;go_function=crossover crossover junction endodeoxyribonuclease RuvC — —
Shewanella oneidensis MR-1 0.49 SO1868 conserved hypothetical protein (NCBI ptt file) 0.67 SO2431 ruvC crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) low > 76
Pseudomonas sp. SVBP6 0.48 COO64_RS22130 S1 RNA-binding domain-containing protein 0.57 COO64_RS20090 ruvC crossover junction endodeoxyribonuclease RuvC low > 93
Pseudomonas stutzeri RCH2 0.48 Psest_2913 Uncharacterized protein conserved in bacteria 0.57 Psest_1495 crossover junction endodeoxyribonuclease RuvC — —
Bacteroides ovatus ATCC 8483 0.47 BACOVA_01598 hypothetical protein 0.33 BACOVA_04396 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas putida KT2440 0.47 PP_4563 conserved protein of unknown function 0.50 PP_1215 Crossover junction endodeoxyribonuclease RuvC low > 96
Pseudomonas sp. BP01 0.47 JOY50_RS01385 S1 RNA-binding domain-containing protein 0.50 JOY50_RS01825 ruvC crossover junction endodeoxyribonuclease RuvC low > 84
Bacteroides thetaiotaomicron VPI-5482 0.46 BT2505 conserved hypothetical protein (NCBI ptt file) 0.33 BT_1664 ruvC Holliday junction resolvase (RefSeq) — —
Phocaeicola dorei CL03T12C01 0.46 ABI39_RS01080 GntR family transcriptional regulator 0.31 ABI39_RS15265 crossover junction endodeoxyribonuclease RuvC low > 72
Phocaeicola vulgatus CL09T03C04 0.46 HMPREF1058_RS00180 GntR family transcriptional regulator 0.31 HMPREF1058_RS01800 crossover junction endodeoxyribonuclease RuvC low > 67
Bacteroides stercoris CC31F 0.46 HMPREF1181_RS03575 GntR family transcriptional regulator 0.32 HMPREF1181_RS05370 crossover junction endodeoxyribonuclease RuvC low > 56
Cellulophaga baltica 18 0.41 M666_RS13700 S1-like domain-containing RNA-binding protein 0.32 M666_RS07260 crossover junction endodeoxyribonuclease RuvC — —
Alteromonas macleodii MIT1002 0.35 MIT1002_02299 hypothetical protein 0.61 MIT1002_01331 Crossover junction endodeoxyribonuclease RuvC — —
Fusobacterium nucleatum SB010 0.21 HUW76_04905 S1 RNA-binding domain-containing protein 0.31 HUW76_02575 crossover junction endodeoxyribonuclease RuvC — —

Not shown: 3 genomes with orthologs for CSW01_07550 only; 77 genomes with orthologs for CSW01_09250 only