Conservation of cofitness between CSW01_03400 and CSW01_08450 in Vibrio cholerae E7946 ATCC 55056

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03400 tRNA pseudouridine(55) synthase TruB 1.0 CSW01_08450 antimicrobial peptide ABC transporter permease SapB 0.51 9
Serratia liquefaciens MT49 0.72 IAI46_01945 tRNA pseudouridine(55) synthase TruB 0.52 IAI46_13530 peptide ABC transporter permease SapB — —
Dickeya dadantii 3937 0.71 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.50 DDA3937_RS12445 peptide ABC transporter permease SapB low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB 0.50 HGI48_RS12510 peptide ABC transporter permease SapB — —
Dickeya dianthicola ME23 0.69 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.50 DZA65_RS12960 peptide ABC transporter permease SapB — —
Pantoea agglomerans CFBP13505 P0401 0.68 PagCFBP13505_RS09110 tRNA pseudouridine(55) synthase TruB 0.46 PagCFBP13505_RS06775 peptide ABC transporter permease SapB — —
Pectobacterium carotovorum WPP14 0.68 HER17_RS18200 tRNA pseudouridine(55) synthase TruB 0.53 HER17_RS09490 putrescine ABC transporter permease SapB — —
Klebsiella michiganensis M5al 0.68 BWI76_RS25080 tRNA pseudouridine(55) synthase 0.48 BWI76_RS12415 antimicrobial peptide ABC transporter permease SapB — —
Pantoea sp. MT58 0.67 IAI47_17015 tRNA pseudouridine(55) synthase TruB 0.49 IAI47_09375 peptide ABC transporter permease SapB — —
Erwinia amylovora T8 0.67 OLJFJH_07250 tRNA pseudouridine(55) synthase TruB 0.53 OLJFJH_13655 putrescine ABC transporter permease SapB low > 58
Escherichia coli BW25113 0.67 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.51 b1293 sapB predicted antimicrobial peptide transporter subunit (NCBI) low > 76
Escherichia coli ECRC102 0.67 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB 0.51 NIAGMN_26635 sapB putrescine ABC transporter permease SapB — —
Escherichia coli ECRC99 0.67 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB 0.51 KEDOAH_26310 sapB putrescine ABC transporter permease SapB — —
Escherichia coli Nissle 1917 0.67 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.51 ECOLIN_RS07820 putrescine export ABC transporter permease SapB — —
Escherichia coli ECOR38 0.67 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.51 HEPCGN_25735 sapB putrescine ABC transporter permease SapB — —
Escherichia coli ECRC98 0.67 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.51 JDDGAC_05010 sapB putrescine ABC transporter permease SapB — —
Escherichia coli BL21 0.67 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.51 ECD_01270 antimicrobial peptide transport ABC transporter permease — —
Escherichia coli ECRC100 0.67 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.51 OKFHMN_02465 sapB putrescine ABC transporter permease SapB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00534 tRNA pseudouridine synthase B 0.51 OHPLBJKB_02389 Putrescine export system permease protein SapB — —
Klebsiella pneumoniae MKP103 0.67 KDGMDA_05890 tRNA pseudouridine(55) synthase TruB 0.48 KDGMDA_19880 putrescine ABC transporter permease SapB low > 95
Escherichia coli ECRC101 0.67 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.51 MCAODC_15805 sapB putrescine ABC transporter permease SapB — —
Escherichia fergusonii Becca 0.67 EFB2_00657 tRNA pseudouridine synthase B 0.51 EFB2_02627 Putrescine export system permease protein SapB — —
Escherichia coli ECRC62 0.67 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB 0.51 BNILDI_18300 sapB putrescine ABC transporter permease SapB — —
Escherichia coli ECOR27 0.67 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.51 NOLOHH_20150 sapB putrescine ABC transporter permease SapB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.48 GFF2689 Peptide transport system permease protein SapB 0.89 48
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3217 tRNA pseudouridine(55) synthase 0.47 EX28DRAFT_0973 ABC-type antimicrobial peptide transport system, permease component — —
Enterobacter sp. TBS_079 0.66 MPMX20_04071 tRNA pseudouridine synthase B 0.49 MPMX20_02475 Putrescine export system permease protein SapB low > 85
Erwinia tracheiphila SCR3 0.66 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB 0.48 LU632_RS11575 sapB putrescine ABC transporter permease SapB low > 74
Erwinia tracheiphila HP pepo 2.2 0.65 IJEDHG_13945 truB tRNA pseudouridine(55) synthase TruB 0.48 IJEDHG_23000 sapB putrescine ABC transporter permease SapB low > 61
Rahnella sp. WP5 0.65 EX31_RS08530 tRNA pseudouridine(55) synthase TruB 0.51 EX31_RS15705 peptide ABC transporter permease SapB — —
Shewanella sp. ANA-3 0.64 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) 0.32 Shewana3_2651 binding-protein-dependent transport systems inner membrane component (RefSeq) — —
Shewanella loihica PV-4 0.64 Shew_2825 tRNA pseudouridine synthase B (RefSeq) 0.29 Shew_2499 binding-protein-dependent transport systems inner membrane component (RefSeq) — —
Shewanella amazonensis SB2B 0.63 Sama_0963 pseudouridylate synthase (RefSeq) 0.30 Sama_1234 peptide ABC transporter, permease protein (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0108 tRNA pseudouridine 55 synthase 0.32 B158DRAFT_1046 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components low > 40
Alteromonas macleodii MIT1002 0.50 MIT1002_01773 tRNA pseudouridine synthase B 0.32 MIT1002_01140 Dipeptide transport system permease protein DppB — —
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.32 Psyr_4239 Binding-protein-dependent transport systems inner membrane component low > 86
Pseudomonas putida KT2440 0.46 PP_4710 tRNA pseudouridine 55 synthase 0.32 PP_0881 dipeptide ABC transporter - putative membrane subunit low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.32 Psyr_4239 Binding-protein-dependent transport systems inner membrane component low > 86
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.32 PfGW456L13_5055 Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) low > 87
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_05550 pseudouridine synthase 0.31 AO353_05395 peptide ABC transporter permease low > 101
Pseudomonas segetis P6 0.44 MPMX49_01203 tRNA pseudouridine synthase B 0.31 MPMX49_03887 Dipeptide transport system permease protein DppB low > 75
Pseudomonas sp. SVBP6 0.44 COO64_RS15160 truB tRNA pseudouridine(55) synthase TruB 0.32 COO64_RS04100 ABC transporter permease subunit low > 93
Pseudomonas fluorescens SBW25 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.32 PFLU_RS04100 ABC transporter permease subunit low > 109
Pseudomonas simiae WCS417 0.44 PS417_23960 pseudouridine synthase 0.32 PS417_04060 dipeptide ABC transporter, permease component (from data) — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.32 PFLU_RS04100 ABC transporter permease subunit low > 109
Pseudomonas lactucae CFBP13502 0.44 GEMAOFIL_04943 tRNA pseudouridine synthase B 0.32 GEMAOFIL_01016 Dipeptide transport system permease protein DppB low > 93
Pseudomonas aeruginosa PA14 0.43 IKLFDK_29890 tRNA pseudouridine(55) synthase TruB 0.33 IKLFDK_01565 Di/tripeptide transport system permease protein DppB low > 100
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS08080 tRNA pseudouridine synthase B 0.34 BPHYT_RS18685 peptide ABC transporter permease low > 109
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_05106 tRNA pseudouridine synthase B 0.33 H281DRAFT_05803 dipeptide transport system permease protein low > 103
Azospirillum sp. SherDot2 0.33 MPMX19_02524 tRNA pseudouridine synthase B 0.33 MPMX19_04418 Dipeptide transport system permease protein DppB 0.68 57
Agrobacterium fabrum C58 0.29 Atu0085 tRNA pseudouridine 55 synthase 0.33 Atu4114 dipeptide ABC transporter permease low > 89
Rhizobium sp. OAE497 0.28 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB 0.32 ABIE40_RS03350 ABC transporter permease subunit low > 107
Rhodospirillum rubrum S1H 0.28 Rru_A3783 tRNA pseudouridine synthase B (NCBI) 0.33 Rru_A2357 Binding-protein-dependent transport systems inner membrane component (NCBI) low > 58

Not shown: 45 genomes with orthologs for CSW01_03400 only; 2 genomes with orthologs for CSW01_08450 only