Conservation of cofitness between CSW01_00645 and CSW01_04555 in Vibrio cholerae E7946 ATCC 55056

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00645 DUF484 domain-containing protein 1.0 CSW01_04555 tRNA pseudouridine(65) synthase TruC 0.39 19
Shewanella sp. ANA-3 0.23 Shewana3_0392 hypothetical protein (RefSeq) 0.59 Shewana3_2824 tRNA pseudouridine synthase C (RefSeq) low > 73
Dickeya dianthicola 67-19 0.22 HGI48_RS20050 DUF484 domain-containing protein 0.64 HGI48_RS05085 tRNA pseudouridine(65) synthase TruC low > 71
Dickeya dianthicola ME23 0.22 DZA65_RS21095 DUF484 domain-containing protein 0.64 DZA65_RS05425 tRNA pseudouridine(65) synthase TruC low > 75
Dickeya dadantii 3937 0.22 DDA3937_RS19895 DUF484 domain-containing protein 0.64 DDA3937_RS05085 tRNA pseudouridine(65) synthase TruC low > 74
Alteromonas macleodii MIT1002 0.21 MIT1002_00158 hypothetical protein 0.50 MIT1002_00998 tRNA pseudouridine synthase C low > 70
Rahnella sp. WP5 0.21 EX31_RS15160 DUF484 domain-containing protein 0.63 EX31_RS13065 tRNA pseudouridine(65) synthase TruC low > 89
Shewanella amazonensis SB2B 0.21 Sama_3248 hypothetical protein (RefSeq) 0.57 Sama_1131 pseudouridylate synthase (RefSeq) low > 62
Erwinia tracheiphila HP pepo 2.2 0.21 IJEDHG_08785 DUF484 domain-containing protein 0.63 IJEDHG_17320 truC tRNA pseudouridine(65) synthase TruC — —
Erwinia tracheiphila SCR3 0.21 LU632_RS24140 DUF484 domain-containing protein 0.63 LU632_RS06295 truC tRNA pseudouridine(65) synthase TruC — —
Erwinia amylovora T8 0.21 OLJFJH_06410 DUF484 domain-containing protein 0.65 OLJFJH_09220 tRNA pseudouridine(65) synthase TruC low > 58
Pantoea sp. MT58 0.21 IAI47_18405 DUF484 domain-containing protein 0.67 IAI47_04065 tRNA pseudouridine(65) synthase TruC low > 76
Pantoea agglomerans CFBP13505 P0401 0.21 PagCFBP13505_RS15385 DUF484 domain-containing protein 0.67 PagCFBP13505_RS16905 tRNA pseudouridine(65) synthase TruC low > 74
Serratia liquefaciens MT49 0.21 IAI46_00720 DUF484 domain-containing protein 0.66 IAI46_20290 tRNA pseudouridine(65) synthase TruC low > 87
Pectobacterium carotovorum WPP14 0.20 HER17_RS01345 DUF484 domain-containing protein 0.63 HER17_RS16365 tRNA pseudouridine(65) synthase TruC low > 75
Shewanella loihica PV-4 0.19 Shew_0324 hypothetical protein (RefSeq) 0.53 Shew_2643 pseudouridylate synthase (RefSeq) low > 60
Marinobacter adhaerens HP15 0.18 HP15_249 protein containing DUF484 0.43 HP15_1021 tRNA pseudouridine synthase C low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.18 GFF238 Protein of unknown function DUF484 0.64 GFF4846 tRNA pseudouridine synthase C (EC 4.2.1.70) low > 78
Rhodanobacter sp000427505 FW510-R12 0.18 LRK53_RS02320 DUF484 family protein 0.41 LRK53_RS03400 pseudouridine synthase low > 59
Enterobacter sp. TBS_079 0.17 MPMX20_04466 hypothetical protein 0.64 MPMX20_03661 tRNA pseudouridine synthase C low > 85
Enterobacter asburiae PDN3 0.17 EX28DRAFT_4479 Uncharacterized protein conserved in bacteria 0.65 EX28DRAFT_2872 Pseudouridylate synthases, 23S RNA-specific — —
Klebsiella pneumoniae MKP103 0.17 KDGMDA_09695 DUF484 domain-containing protein 0.65 KDGMDA_03375 tRNA pseudouridine(65) synthase TruC low > 95
Escherichia coli ECRC102 0.17 NIAGMN_12180 yigA Uncharacterized protein YigA 0.65 NIAGMN_17980 truC tRNA pseudouridine(65) synthase TruC low > 80
Escherichia coli ECRC99 0.17 KEDOAH_13725 yigA Uncharacterized protein YigA 0.65 KEDOAH_07920 truC tRNA pseudouridine(65) synthase TruC — —
Escherichia coli ECRC98 0.17 JDDGAC_18050 yigA Uncharacterized protein YigA 0.65 JDDGAC_23875 truC tRNA pseudouridine(65) synthase TruC low > 87
Escherichia coli ECRC100 0.17 OKFHMN_14425 yigA Uncharacterized protein YigA 0.65 OKFHMN_20210 truC tRNA pseudouridine(65) synthase TruC low > 79
Escherichia coli ECRC101 0.16 MCAODC_04930 yigA Uncharacterized protein YigA 0.65 MCAODC_10735 truC tRNA pseudouridine(65) synthase TruC low > 87
Rhodanobacter denitrificans FW104-10B01 0.16 LRK54_RS08540 DUF484 family protein 0.40 LRK54_RS10630 pseudouridine synthase low > 59
Escherichia coli BL21 0.16 ECD_03686 DUF484 family protein 0.65 ECD_02636 tRNA(Ile1,Asp) pseudouridine(65) synthase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.16 OHPLBJKB_04240 hypothetical protein 0.65 OHPLBJKB_00940 tRNA pseudouridine synthase C low > 74
Escherichia coli BW25113 0.16 b3810 yigA hypothetical protein (NCBI) 0.65 b2791 yqcB tRNA pseudouridine synthase (NCBI) low > 76
Rhodanobacter denitrificans MT42 0.16 LRK55_RS08305 DUF484 family protein 0.41 LRK55_RS10270 pseudouridine synthase low > 63
Escherichia coli ECOR27 0.16 NOLOHH_06555 yigA Uncharacterized protein YigA 0.65 NOLOHH_12090 truC tRNA pseudouridine(65) synthase TruC low > 76
Escherichia coli ECOR38 0.16 HEPCGN_13130 yigA Uncharacterized protein YigA 0.65 HEPCGN_19465 truC tRNA pseudouridine(65) synthase TruC low > 88
Escherichia coli ECRC62 0.16 BNILDI_04980 yigA Uncharacterized protein YigA 0.65 BNILDI_10595 truC tRNA pseudouridine(65) synthase TruC low > 75
Escherichia coli Nissle 1917 0.16 ECOLIN_RS21870 DUF484 domain-containing protein 0.65 ECOLIN_RS15550 tRNA pseudouridine(65) synthase TruC low > 55
Escherichia fergusonii Becca 0.16 EFB2_04827 hypothetical protein 0.65 EFB2_01126 tRNA pseudouridine synthase C low > 86
Dyella japonica UNC79MFTsu3.2 0.16 ABZR86_RS15020 DUF484 family protein 0.39 ABZR86_RS13460 pseudouridine synthase low > 74
Klebsiella michiganensis M5al 0.16 BWI76_RS01205 DUF484 family protein 0.66 BWI76_RS22850 tRNA pseudouridine synthase TruC low > 92
Rhodanobacter sp. FW510-T8 0.15 OKGIIK_15330 DUF484 domain-containing protein 0.42 OKGIIK_13270 pseudouridylate synthase low > 53
Dechlorosoma suillum PS 0.14 Dsui_0650 hypothetical protein 0.50 Dsui_3127 23S RNA-specific pseudouridylate synthase low > 51
Lysobacter sp. OAE881 0.13 ABIE51_RS03030 DUF484 family protein 0.35 ABIE51_RS00215 pseudouridine synthase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.12 Xcc-8004.846.1 Protein of unknown function DUF484 0.35 Xcc-8004.296.1 tRNA pseudouridine synthase C (EC 4.2.1.70) low > 74

Not shown: 28 genomes with orthologs for CSW01_00645 only; 8 genomes with orthologs for CSW01_04555 only