| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_03215 | | ABC transporter ATP-binding protein | 1.0 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 0.92 | 20 |
| Shewanella loihica PV-4 | 0.48 | Shew_0863 | | ABC transporter-related protein (RefSeq) | 0.60 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_3515 | | ABC transporter related (RefSeq) | 0.60 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.43 | Sama_0668 | | iron(III) ABC transporter, ATP-binding protein (RefSeq) | 0.59 | Sama_2605 | | pseudouridylate synthase (RefSeq) | — | — |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS05520 | | ABC transporter ATP-binding protein | 0.71 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Marinobacter adhaerens HP15 | 0.41 | HP15_749 | | iron(III) ABC transporter, ATP-binding protein | 0.51 | HP15_527 | | pseudouridine synthase, RluA family | low | > 73 |
| Pseudomonas segetis P6 | 0.41 | ACVTMO_RS07115 | | ABC transporter ATP-binding protein | 0.53 | ACVTMO_RS19440 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Pseudomonas sp. BP01 | 0.39 | JOY50_RS14885 | | ABC transporter ATP-binding protein | 0.54 | JOY50_RS27130 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 84 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.39 | Psyr_3902 | | ABC transporter:TOBE | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.39 | Psyr_3902 | | ABC transporter:TOBE | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.39 | AO353_04160 | | iron ABC transporter ATP-binding protein | 0.54 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | low | > 101 |
| Pseudomonas lactucae CFBP13502 | 0.39 | GEMAOFIL_01305 | | Vitamin B12 import ATP-binding protein BtuD | 0.54 | GEMAOFIL_00969 | | Ribosomal large subunit pseudouridine synthase D | low | > 96 |
| Pseudomonas putida KT2440 | 0.39 | PP_1078 | | putative ABC transporter, ATP-binding protein | 0.53 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | — | — |
| Pseudomonas sp. DMC3 | 0.39 | GFF5103 | | Vitamin B12 import ATP-binding protein BtuD | 0.54 | GFF4004 | | Ribosomal large subunit pseudouridine synthase D | low | > 89 |
| Pseudomonas sp. RS175 | 0.39 | PFR28_03364 | | Vitamin B12 import ATP-binding protein BtuD | 0.54 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.39 | Pf6N2E2_5578 | | Ferric iron ABC transporter, ATP-binding protein | 0.54 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas sp. SVBP6 | 0.39 | COO64_RS16820 | | ABC transporter ATP-binding protein | 0.54 | COO64_RS11055 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 93 |
| Pseudomonas fluorescens GW456-L13 | 0.39 | PfGW456L13_1738 | | Ferric iron ABC transporter, ATP-binding protein | 0.54 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas orientalis W4I3 | 0.38 | QF045_RS08515 | | ABC transporter ATP-binding protein | 0.54 | QF045_RS06805 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 93 |
| Pseudomonas fluorescens FW300-N2C3 | 0.38 | AO356_18270 | | iron ABC transporter ATP-binding protein | 0.55 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.38 | Pf1N1B4_763 | | Ferric iron ABC transporter, ATP-binding protein | 0.54 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas sp. S08-1 | 0.38 | OH686_20400 | | Ferric iron ABC transporter, ATP-binding protein | 0.53 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | low | > 80 |
| Synechocystis sp000284455 PCC 6803 | 0.38 | SGL_RS10355 | | ABC transporter ATP-binding protein | 0.31 | SGL_RS11530 | | RluA family pseudouridine synthase | — | — |
| Acidovorax sp. GW101-3H11 | 0.37 | Ac3H11_3972 | | Ferric iron ABC transporter, ATP-binding protein | 0.32 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 79 |
| Pseudomonas simiae WCS417 | 0.36 | PS417_05590 | | iron ABC transporter ATP-binding protein | 0.54 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Pseudomonas aeruginosa PUPa3 | 0.36 | DQ20_RS41825 | | ABC transporter ATP-binding protein | 0.51 | DQ20_RS56195 | rluD;go_function=RNA | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.36 | IKLFDK_18060 | | iron ABC transporter ATP-binding protein | 0.51 | IKLFDK_00810 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 98 |
| Pseudomonas aeruginosa MRSN321 | 0.36 | DY961_RS15325 | | ABC transporter ATP-binding protein | 0.51 | DY961_RS23730 | rluD;go_function=RNA | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 100 |
| Pseudomonas fluorescens SBW25-INTG | 0.36 | PFLU_RS05675 | | ABC transporter ATP-binding protein | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.36 | PFLU_RS05675 | | ABC transporter ATP-binding protein | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Kangiella aquimarina DSM 16071 | 0.36 | B158DRAFT_1227 | | ABC-type spermidine/putrescine transport systems, ATPase components | 0.53 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | — | — |
| Dickeya dadantii 3937 | 0.36 | DDA3937_RS15995 | | ABC transporter ATP-binding protein | 0.70 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Dickeya dianthicola 67-19 | 0.35 | HGI48_RS16115 | | ABC transporter ATP-binding protein | 0.70 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 71 |
| Synechococcus elongatus PCC 7942 | 0.35 | Synpcc7942_1406 | futC | ATPase | 0.29 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Dickeya dianthicola ME23 | 0.35 | DZA65_RS17200 | | ABC transporter ATP-binding protein | 0.70 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Agrobacterium fabrum C58 | 0.35 | Atu0406 | | ABC transporter, nucleotide binding/ATPase protein | 0.33 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | — | — |
| Rhodospirillum rubrum S1H | 0.35 | Rru_A0767 | | ABC transporter component (NCBI) | 0.35 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | low | > 58 |
| Alteromonas macleodii MIT1002 | 0.34 | MIT1002_00117 | | Maltose/maltodextrin import ATP-binding protein MalK | 0.59 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | low | > 70 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.34 | GFF662 | | Ferric iron ABC transporter, ATP-binding protein | 0.35 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 90 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.26 | Echvi_1022 | | ABC-type spermidine/putrescine transport systems, ATPase components | 0.31 | Echvi_0642 | | pseudouridine synthase, RluA family | low | > 79 |
Not shown: 4 genomes with orthologs for CSW01_03215 only; 73 genomes with orthologs for CSW01_03695 only