Conservation of cofitness between CSW01_13620 and CSW01_03155 in Vibrio cholerae E7946 ATCC 55056

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13620 aspartate ammonia-lyase 1.0 CSW01_03155 RNA polymerase-binding transcription factor DksA 0.69 7
Rahnella sp. WP5 0.77 EX31_RS08965 aspartate ammonia-lyase 0.86 EX31_RS03250 RNA polymerase-binding protein DksA low > 89
Escherichia coli ECRC100 0.75 OKFHMN_12430 aspA aspartate ammonia-lyase 0.86 OKFHMN_10345 dksA RNA polymerase-binding protein DksA low > 79
Escherichia coli Nissle 1917 0.75 ECOLIN_RS24045 aspartate ammonia-lyase 0.86 ECOLIN_RS00815 RNA polymerase-binding protein DksA — —
Escherichia coli ECRC102 0.75 NIAGMN_10275 aspA aspartate ammonia-lyase 0.86 NIAGMN_08195 dksA RNA polymerase-binding protein DksA low > 80
Escherichia coli ECRC98 0.75 JDDGAC_16065 aspA aspartate ammonia-lyase 0.86 JDDGAC_13940 dksA RNA polymerase-binding protein DksA low > 87
Escherichia coli BW25113 0.75 b4139 aspA aspartate ammonia-lyase (aspartase) (VIMSS) 0.86 b0145 dksA DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) low > 76
Escherichia coli ECOR27 0.75 NOLOHH_04695 aspA aspartate ammonia-lyase 0.86 NOLOHH_02690 dksA RNA polymerase-binding protein DksA low > 76
Escherichia coli ECRC101 0.75 MCAODC_02940 aspA aspartate ammonia-lyase 0.86 MCAODC_00860 dksA RNA polymerase-binding protein DksA low > 87
Escherichia fergusonii Becca 0.75 EFB2_04396 Aspartate ammonia-lyase 0.86 EFB2_03899 RNA polymerase-binding transcription factor DksA low > 86
Escherichia coli BL21 0.75 ECD_04009 aspartate ammonia-lyase 0.86 ECD_00144 transcriptional regulator of rRNA transcription; DnaK suppressor protein — —
Escherichia coli ECRC99 0.75 KEDOAH_15735 aspA aspartate ammonia-lyase 0.86 KEDOAH_17810 dksA RNA polymerase-binding protein DksA — —
Escherichia coli ECOR38 0.75 HEPCGN_10655 aspA aspartate ammonia-lyase 0.86 HEPCGN_08295 dksA RNA polymerase-binding protein DksA low > 88
Escherichia coli ECRC62 0.75 BNILDI_06795 aspA aspartate ammonia-lyase 0.86 BNILDI_08980 dksA RNA polymerase-binding protein DksA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_03904 Aspartate ammonia-lyase 0.86 OHPLBJKB_03517 RNA polymerase-binding transcription factor DksA low > 74
Pectobacterium carotovorum WPP14 0.75 HER17_RS19355 aspartate ammonia-lyase 0.83 HER17_RS05580 RNA polymerase-binding protein DksA low > 75
Erwinia amylovora T8 0.75 OLJFJH_02615 aspartate ammonia-lyase 0.86 OLJFJH_00765 RNA polymerase-binding protein DksA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF2013 Aspartate ammonia-lyase (EC 4.3.1.1) 0.86 GFF87 C4-type zinc finger protein, DksA/TraR family low > 78
Enterobacter asburiae PDN3 0.75 EX28DRAFT_3336 aspartate ammonia-lyase 0.86 EX28DRAFT_3734 transcriptional regulator, TraR/DksA family — —
Enterobacter sp. TBS_079 0.75 MPMX20_00419 Aspartate ammonia-lyase 0.86 MPMX20_00831 RNA polymerase-binding transcription factor DksA low > 85
Klebsiella pneumoniae MKP103 0.75 KDGMDA_10820 aspartate ammonia-lyase 0.86 KDGMDA_13270 RNA polymerase-binding protein DksA low > 95
Serratia liquefaciens MT49 0.75 IAI46_01480 aspartate ammonia-lyase 0.86 IAI46_21210 RNA polymerase-binding protein DksA low > 87
Pantoea agglomerans CFBP13505 P0401 0.74 PagCFBP13505_RS09490 aspartate ammonia-lyase 0.85 PagCFBP13505_RS13365 RNA polymerase-binding protein DksA low > 74
Klebsiella michiganensis M5al 0.74 BWI76_RS02330 aspartate ammonia-lyase 0.84 BWI76_RS05015 transcriptional regulator low > 92
Pantoea sp. MT58 0.74 IAI47_17320 aspartate ammonia-lyase 0.85 IAI47_15635 RNA polymerase-binding protein DksA low > 76
Dickeya dadantii 3937 0.73 DDA3937_RS02720 aspartate ammonia-lyase 0.86 DDA3937_RS15935 RNA polymerase-binding protein DksA — —
Dickeya dianthicola 67-19 0.73 HGI48_RS02695 aspartate ammonia-lyase 0.85 HGI48_RS16050 RNA polymerase-binding protein DksA low > 71
Dickeya dianthicola ME23 0.73 DZA65_RS02850 aspartate ammonia-lyase 0.85 DZA65_RS17135 RNA polymerase-binding protein DksA — —
Dechlorosoma suillum PS 0.54 Dsui_3481 aspartate ammonia-lyase 0.56 Dsui_2717 RNA polymerase-binding protein DksA low > 51
Pseudomonas sp. S08-1 0.52 OH686_13315 Aspartate ammonia-lyase 0.70 OH686_17280 RNA polymerase-binding protein DksA — —
Pseudomonas aeruginosa PA14 0.52 IKLFDK_26280 aspartate ammonia-lyase 0.70 IKLFDK_30000 RNA polymerase-binding protein DksA low > 98
Pseudomonas aeruginosa MRSN321 0.52 DY961_RS25420 aspA;go_function=aspartate aspartate ammonia-lyase 0.70 DY961_RS09350 dksA;go_function=enzyme RNA polymerase-binding protein DksA low > 100
Pseudomonas aeruginosa PUPa3 0.52 DQ20_RS57875 aspA;go_function=aspartate aspartate ammonia-lyase 0.70 DQ20_RS52680 dksA;go_function=enzyme RNA polymerase-binding protein DksA low > 101
Pseudomonas sp. SVBP6 0.51 COO64_RS01760 aspA aspartate ammonia-lyase 0.67 COO64_RS15070 dksA RNA polymerase-binding protein DksA low > 93
Pseudomonas sp. BP01 0.51 JOY50_RS08810 aspA aspartate ammonia-lyase 0.68 JOY50_RS27695 dksA RNA polymerase-binding protein DksA low > 84
Pseudomonas putida KT2440 0.51 PP_5338 aspartate ammonia-lyase 0.64 PP_4693 RNA polymerase-binding transcription factor DksA low > 96
Pseudomonas sp. RS175 0.51 PFR28_04498 Aspartate ammonia-lyase 0.68 PFR28_03714 RNA polymerase-binding transcription factor DksA low > 88
Pseudomonas fluorescens FW300-N1B4 0.51 Pf1N1B4_2025 Aspartate ammonia-lyase (EC 4.3.1.1) 0.68 Pf1N1B4_2862 C4-type zinc finger protein, DksA/TraR family — —
Pseudomonas lactucae CFBP13502 0.51 GEMAOFIL_00092 Aspartate ammonia-lyase 0.69 GEMAOFIL_04926 RNA polymerase-binding transcription factor DksA low > 96
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_11090 aspartate ammonia-lyase 0.68 AO356_16095 molecular chaperone DnaK low > 104
Pseudomonas fluorescens SBW25 0.51 PFLU_RS29815 aspartate ammonia-lyase 0.67 PFLU_RS25715 RNA polymerase-binding protein DksA low > 109
Pseudomonas syringae pv. syringae B728a 0.51 Psyr_5051 Aspartate ammonia-lyase 0.67 Psyr_0835 transcriptional regulator, TraR/DksA family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.51 Psyr_5051 Aspartate ammonia-lyase 0.67 Psyr_0835 transcriptional regulator, TraR/DksA family low > 86
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS29815 aspartate ammonia-lyase 0.67 PFLU_RS25715 RNA polymerase-binding protein DksA low > 109
Pseudomonas segetis P6 0.51 MPMX49_00161 Aspartate ammonia-lyase 0.69 MPMX49_01257 RNA polymerase-binding transcription factor DksA — —
Pseudomonas simiae WCS417 0.51 PS417_28130 aspartate ammonia-lyase 0.69 PS417_23875 molecular chaperone DnaK — —
Pseudomonas orientalis W4I3 0.51 QF045_RS02490 aspartate ammonia-lyase 0.69 QF045_RS26135 RNA polymerase-binding protein DksA low > 93
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_742 Aspartate ammonia-lyase (EC 4.3.1.1) 0.67 PfGW456L13_1528 C4-type zinc finger protein, DksA/TraR family low > 87
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_09950 aspartate ammonia-lyase 0.68 AO353_14420 molecular chaperone DnaK low > 101
Pseudomonas sp. DMC3 0.51 GFF488 Aspartate ammonia-lyase 0.68 GFF4034 RNA polymerase-binding transcription factor DksA low > 89
Agrobacterium fabrum C58 0.50 Atu3793 aspartate ammonia-lyase 0.35 Atu1359 dnaK deletion suppressor protein low > 89
Pseudomonas stutzeri RCH2 0.50 Psest_4074 Aspartate ammonia-lyase 0.68 Psest_1003 RNA polymerase-binding protein DksA — —
Shewanella amazonensis SB2B 0.45 Sama_0789 aspartate ammonia-lyase (RefSeq) 0.82 Sama_0780 TraR/DksA family transcriptional regulator (RefSeq) low > 62
Castellaniella sp019104865 MT123 0.44 ABCV34_RS07730 aspartate ammonia-lyase 0.31 ABCV34_RS13420 RNA polymerase-binding protein DksA — —

Not shown: 17 genomes with orthologs for CSW01_13620 only; 22 genomes with orthologs for CSW01_03155 only