Conservation of cofitness between CSW01_11715 and CSW01_02870 in Vibrio cholerae E7946 ATCC 55056

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_11715 RNA polymerase subunit sigma 1.0 CSW01_02870 CinA family protein 0.44 15
Alteromonas macleodii MIT1002 0.40 MIT1002_02682 Sigma-W factor 0.45 MIT1002_00954 Nicotinamide-nucleotide amidohydrolase PncC low > 70
Dinoroseobacter shibae DFL-12 0.32 Dshi_0366 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) 0.33 Dshi_1579 CinA domain protein (RefSeq) low > 64
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_13920 RNA polymerase subunit sigma 0.40 OKGIIK_03735 pncC damage-inducible protein CinA low > 53
Marinobacter adhaerens HP15 0.29 HP15_270 RNA polymerase, sigma-24 subunit, ECF subfamily 0.42 HP15_1046 competence damage-inducible protein A low > 73
Rhizobium sp. OAE497 0.29 ABIE40_RS18210 sigma-70 family RNA polymerase sigma factor 0.40 ABIE40_RS09070 CinA family protein low > 107
Rhodanobacter denitrificans MT42 0.27 LRK55_RS07240 sigma-70 family RNA polymerase sigma factor 0.40 LRK55_RS14690 CinA family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS07500 sigma-70 family RNA polymerase sigma factor 0.40 LRK54_RS14975 CinA family protein low > 59
Caulobacter crescentus NA1000 0.26 CCNA_00685 RNA polymerase sigma factor 0.33 CCNA_01811 competence/damage-inducible protein CinA low > 66
Caulobacter crescentus NA1000 Δfur 0.26 CCNA_00685 RNA polymerase sigma factor 0.33 CCNA_01811 competence/damage-inducible protein CinA low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS05845 sigma-70 family RNA polymerase sigma factor 0.37 A4249_RS04795 CinA family protein low > 48
Variovorax sp. SCN45 0.22 GFF3817 RNA polymerase sigma factor 0.43 GFF6273 Nicotinamide-nucleotide amidase (EC 3.5.1.42) low > 127
Pseudomonas sp. S08-1 0.22 OH686_11525 hypothetical protein 0.37 OH686_18200 Nicotinamide-nucleotide amidase low > 80
Burkholderia phytofirmans PsJN 0.21 BPHYT_RS21845 hypothetical protein 0.44 BPHYT_RS16895 competence damage-inducible protein A low > 109
Ralstonia solanacearum PSI07 0.19 RPSI07_RS13090 DNA-directed RNA polymerase sigma-70 factor 0.47 RPSI07_RS11330 CinA family protein — —
Enterobacter asburiae PDN3 0.19 EX28DRAFT_2390 RNA polymerase sigma factor, sigma-70 family 0.48 EX28DRAFT_2786 amidohydrolase, PncC family low > 76
Ralstonia solanacearum UW163 0.19 UW163_RS09400 DNA-directed RNA polymerase sigma-70 factor 0.47 UW163_RS07710 CinA family protein — —
Ralstonia solanacearum IBSBF1503 0.19 RALBFv3_RS04270 DNA-directed RNA polymerase sigma-70 factor 0.47 RALBFv3_RS05915 CinA family protein low > 76
Ralstonia sp. UNC404CL21Col 0.19 ABZR87_RS16160 sigma-70 family RNA polymerase sigma factor 0.48 ABZR87_RS01580 CinA family protein low > 80
Pantoea agglomerans CFBP13505 P0401 0.18 PagCFBP13505_RS08045 sigma-70 family RNA polymerase sigma factor 0.47 PagCFBP13505_RS16675 nicotinamide-nucleotide amidase low > 74
Pseudomonas segetis P6 0.18 ACVTMO_RS06730 sigma-70 family RNA polymerase sigma factor 0.36 ACVTMO_RS16505 CinA family protein low > 75
Xanthomonas campestris pv. campestris strain 8004 0.18 Xcc-8004.3601.1 RNA polymerase sigma-70 factor 0.44 Xcc-8004.3118.1 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 74
Agrobacterium fabrum C58 0.18 Atu1982 sigma factor 0.38 Atu1442 competence/damage-inducible protein CinA low > 89
Pseudomonas aeruginosa MRSN321 0.17 DY961_RS02510 sbrI;inference=COORDINATES ECF family RNA polymerase sigma factor SbrI 0.38 DY961_RS14890 CinA family protein low > 100
Pseudomonas aeruginosa PUPa3 0.17 DQ20_RS33080 sbrI;inference=COORDINATES ECF family RNA polymerase sigma factor SbrI 0.38 DQ20_RS42240 CinA family protein low > 101
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF329 RNA polymerase sigma-54 factor RpoN 0.44 GFF3091 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 90
Cupriavidus basilensis FW507-4G11 0.17 RR42_RS15915 RNA polymerase subunit sigma-24 0.47 RR42_RS17625 damage-inducible protein CinA low > 128
Phocaeicola dorei CL03T12C01 0.17 ABI39_RS09920 sigma-70 family RNA polymerase sigma factor 0.32 ABI39_RS17105 CinA family protein low > 72
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS14290 sigma-70 family RNA polymerase sigma factor 0.32 HMPREF1058_RS04115 CinA family protein low > 67
Pantoea sp. MT58 0.17 IAI47_19735 sigma-70 family RNA polymerase sigma factor 0.46 IAI47_04295 nicotinamide-nucleotide amidase low > 76
Rahnella sp. WP5 0.16 EX31_RS18905 sigma-70 family RNA polymerase sigma factor 0.50 EX31_RS07805 nicotinamide-nucleotide amidase low > 89
Pseudomonas sp. BP01 0.16 JOY50_RS12975 sigma-70 family RNA polymerase sigma factor 0.37 JOY50_RS23775 CinA family protein low > 84
Acidovorax sp. GW101-3H11 0.16 Ac3H11_1622 RNA polymerase sigma factor 0.40 Ac3H11_738 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS low > 79
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS15190 RNA polymerase sigma-70 factor 0.37 HMPREF1078_RS09765 CinA family protein low > 61

Not shown: 14 genomes with orthologs for CSW01_11715 only; 59 genomes with orthologs for CSW01_02870 only