Conservation of cofitness between CSW01_03435 and CSW01_02835 in Vibrio cholerae E7946 ATCC 55056

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03435 protease 1.0 CSW01_02835 RNA polymerase sigma factor RpoS 0.75 18
Klebsiella michiganensis M5al 0.75 BWI76_RS24970 peptidase U32 0.70 BWI76_RS22645 RNA polymerase sigma factor RpoS low > 92
Klebsiella pneumoniae MRSN742743 0.75 KFA93_RS13035 peptidase U32 family protein 0.70 KFA93_RS18590 rpoS;go_function=DNA RNA polymerase sigma factor RpoS low > 82
Klebsiella pneumoniae MKP103 0.75 KDGMDA_05840 protease 0.70 KDGMDA_03220 RNA polymerase sigma factor RpoS low > 94
Escherichia coli ECOR27 0.74 NOLOHH_09975 ubiU Ubiquinone biosynthesis protein UbiU 0.70 NOLOHH_12310 rpoS RNA polymerase sigma factor RpoS low > 75
Escherichia coli ECRC100 0.74 OKFHMN_18175 protease 0.70 OKFHMN_20495 rpoS RNA polymerase sigma factor RpoS low > 79
Escherichia coli ECOR38 0.74 HEPCGN_17050 protease 0.70 HEPCGN_19675 rpoS RNA polymerase sigma factor RpoS low > 88
Escherichia coli ECRC98 0.74 JDDGAC_21800 protease 0.70 JDDGAC_24160 rpoS RNA polymerase sigma factor RpoS low > 87
Escherichia coli ECRC102 0.74 NIAGMN_15935 ubiU Ubiquinone biosynthesis protein UbiU 0.70 NIAGMN_18265 rpoS RNA polymerase sigma factor RpoS low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_00542 putative protease YhbU 0.70 OHPLBJKB_00992 RNA polymerase sigma factor RpoS low > 74
Escherichia coli ECRC101 0.74 MCAODC_08695 protease 0.70 MCAODC_11020 rpoS RNA polymerase sigma factor RpoS low > 87
Escherichia coli ECRC62 0.74 BNILDI_01555 ubiU Ubiquinone biosynthesis protein UbiU 0.70 BNILDI_10860 rpoS RNA polymerase sigma factor RpoS low > 75
Escherichia coli BW25113 0.74 b3158 yhbU predicted peptidase (collagenase-like) (NCBI) 0.70 b2741 rpoS RNA polymerase sigma factor (NCBI) low > 76
Escherichia coli BL21 0.74 ECD_03025 U32 peptidase family protein 0.70 ECD_02591 RNA polymerase, sigma S (sigma 38) factor low > 61
Rahnella sp. WP5 0.74 EX31_RS08480 U32 family peptidase 0.70 EX31_RS07825 RNA polymerase sigma factor RpoS low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF1510 FIG139552: Putative protease 0.70 GFF4788 RNA polymerase sigma factor RpoS low > 78
Pectobacterium carotovorum WPP14 0.74 HER17_RS18160 U32 family peptidase 0.68 HER17_RS04350 RNA polymerase sigma factor RpoS low > 75
Escherichia fergusonii Becca 0.74 EFB2_00665 putative protease YhbU 0.70 EFB2_01169 RNA polymerase sigma factor RpoS low > 86
Dickeya dianthicola ME23 0.73 DZA65_RS03285 U32 family peptidase 0.68 DZA65_RS18020 RNA polymerase sigma factor RpoS low > 75
Dickeya dadantii 3937 0.73 DDA3937_RS03115 U32 family peptidase 0.69 DDA3937_RS16875 RNA polymerase sigma factor RpoS — —
Dickeya dianthicola 67-19 0.73 HGI48_RS03290 U32 family peptidase 0.68 HGI48_RS16945 RNA polymerase sigma factor RpoS low > 71
Erwinia tracheiphila SCR3 0.72 LU632_RS21005 U32 family peptidase 0.69 LU632_RS06480 rpoS RNA polymerase sigma factor RpoS 0.44 53
Erwinia tracheiphila HP pepo 2.2 0.72 IJEDHG_14005 protease 0.69 IJEDHG_17500 rpoS RNA polymerase sigma factor RpoS low > 61
Enterobacter asburiae PDN3 0.72 EX28DRAFT_3207 Collagenase and related proteases 0.70 EX28DRAFT_2837 RNA polymerase, sigma 38 subunit, RpoS low > 76
Pantoea sp. MT58 0.72 IAI47_16965 U32 family peptidase 0.71 IAI47_04235 RNA polymerase sigma factor RpoS low > 76
Enterobacter sp. TBS_079 0.72 MPMX20_04062 putative protease YhbU 0.70 MPMX20_03627 RNA polymerase sigma factor RpoS low > 85
Serratia liquefaciens MT49 0.71 IAI46_02015 U32 family peptidase 0.70 IAI46_03790 RNA polymerase sigma factor RpoS 0.48 22
Pseudomonas aeruginosa PUPa3 0.65 DQ20_RS48610 peptidase U32 family protein 0.62 DQ20_RS42260 rpoS;go_function=DNA RNA polymerase sigma factor RpoS low > 102
Pseudomonas aeruginosa MRSN321 0.65 DY961_RS13305 peptidase U32 family protein 0.62 DY961_RS14865 rpoS;go_function=DNA RNA polymerase sigma factor RpoS low > 100
Pseudomonas aeruginosa PA14 0.65 IKLFDK_20175 protease 0.62 IKLFDK_18495 RNA polymerase sigma factor RpoS low > 99
Pseudomonas stutzeri RCH2 0.65 Psest_0835 Collagenase and related proteases 0.61 Psest_2806 RNA polymerase sigma factor RpoS low > 67
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_22050 protease 0.63 AO353_16615 RNA polymerase sigma factor RpoS low > 101
Pseudomonas sp. SVBP6 0.64 COO64_RS14190 peptidase U32 family protein 0.63 COO64_RS19795 rpoS RNA polymerase sigma factor RpoS low > 93
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_5746 FIG139552: Putative protease 0.62 Pf1N1B4_3115 RNA polymerase sigma factor RpoS low > 87
Pseudomonas fluorescens FW300-N2C3 0.63 AO356_25160 protease 0.62 AO356_05885 RNA polymerase sigma factor RpoS low > 104
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_721 FIG139552: Putative protease 0.62 Pf6N2E2_3037 RNA polymerase sigma factor RpoS low > 103
Pseudomonas sp. RS175 0.63 PFR28_02214 putative protease YhbU 0.62 PFR28_00427 RNA polymerase sigma factor RpoS low > 88
Pseudomonas lactucae CFBP13502 0.63 GEMAOFIL_03433 putative protease YhbU 0.62 GEMAOFIL_01443 RNA polymerase sigma factor RpoS low > 96
Shewanella loihica PV-4 0.62 Shew_2787 peptidase U32 (RefSeq) 0.68 Shew_1213 RpoD family RNA polymerase sigma factor (RefSeq) low > 60
Pseudomonas simiae WCS417 0.62 PS417_15755 protease 0.62 PS417_06365 RNA polymerase sigma factor low > 88
Shewanella oneidensis MR-1 0.62 SO1249 peptidase, U32 family (NCBI ptt file) 0.66 SO3432 rpoS RNA polymerase sigma-38 factor (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.62 Shewana3_1065 peptidase U32 (RefSeq) 0.66 Shewana3_1124 RNA polymerase, sigma 38 subunit, RpoS (RefSeq) low > 73
Shewanella amazonensis SB2B 0.60 Sama_0998 U32 family peptidase (RefSeq) 0.68 Sama_1044 RNA polymerase sigma-38 factor (RefSeq) low > 62
Dechlorosoma suillum PS 0.60 Dsui_0962 collagenase-like protease 0.44 Dsui_1971 RNA polymerase sigma factor RpoS low > 51

Not shown: 18 genomes with orthologs for CSW01_03435 only; 20 genomes with orthologs for CSW01_02835 only